Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01941 ATGGAACTTCCCCAAATCTCCTCACCGACCACTTCTCTGCCTGCAATCTTTGCCCTTCTCCTCTTTCTTTATGCTCTCTTCACTATAATTTCTGCTCACCGCAAGAGATTACCGCCCCAACCCCGCGGTGCTTGGCCGGTCATCGGCCACCTCCCTTTACTAACTGCAAAAGAACCCAATCACACCACGTTGGGAAAATTGGCCGACGTTTATGGACCAATCTTTATGTTAAGATTAGGCGTCCACCGAACCTTGATTGTGAGCGGTTGGGAAGTGGCAAGGGAGTGCTTTACTGTCAACGACAAAGCCTTTGCCTCCCGCCCCAAGTTTGCCGCCGCACAGCTACTCGGCTATGATTATGCCATGTTTGGGCTAAGCCCATACGGATCGCACTGGAGCCACTTGCGTAAAATAGCCACGCTTGAACTCCTCGCCAACCATCGACTGGAGAAGCTCCGACACATCCCAAGATCAGAGGTTCAAAGCTCGATCCAGAAACTACACCAGCTCTGCAAATCAAGTGATGGAGGCAAGAAAGCGTTGGTGGAGATGGAGACGTGGTTCGGAGAAATAGCGCTGAATACCATATTCAGGATGGTGGTCGGAAAACGATTCACCACTGCTTTTGAAGGTAGCGGTGGCGCAGAGTATCGGCACGCGTTGGAGGATTTTTTTAATCTGTTTACAGTATTTGTTCCGTCGGATTTGTTTCCGTTCCTAAAATGGTTCGACTTTGGAGGTCATAAGAAGGCCATGAAGAAAACGGCAAAGGTGATGGACGAGATGCTTGATAAATGGCTCACAGAGCATCGTGAGAGGAGAAATTCCGGTGAAGTGGCGCCGGAAGAGCAGGATTTCATGCATGTTATGTTGTCTTTTATAGACAATGAAGAATTTTCCGGCTACGATGCCGACACGGTCATCAAATCCACCTGTTTGGCTTTGATATTGGGAGGATTTCACACCACCACAACCGAAATGACTTGGGCTCTTTCTTTACTCCTCAATCGTGAAGAAGCATACGAGAAGCTTCAAAAGGAATTAGACCAACATGTTGGAAGAGACAGGGTAGTGAGAGAATCCGATCTGAAAAATTTGGTATATCTCCAAGCAGTTGTGAAGGAAACGTTGCGTATGTATCCTGCAGGACAGCTCTCGGTCCCTCATGAATCTATAGAAGATTGTACCGTTGCTGGGTATCACATCCCAGCAAAGACACGACTATGGGTGAATCTTTATAGGCTCCAAAGAGATCCAAGTGTTTGGGAGAATCCTAACGAATTTTTTCCCGAGAGGTTCTTGACAACTCAAAAGAATTTTGATGTTAAAGGACGAAATCCCCAATTGATACCGTTTGGTTCTGGTCGAAGAATTTGCCCTGCAGTAACTTTTGCCCTCCAAATTTTGCACTTGTCGTTTGCAAGACTTCTTCATGAGTTTGAAATTGGACGACCATCCGAAAAGCCACTTGATATGGAAGAGATTGCTGCTTTGAATATCACTAAAAAAGTCCCTCTTAAAGTCGTCTTAACTCCACGTATTTCTACTGAAGTTTATGAATGA 1563 46.13 MELPQISSPTTSLPAIFALLLFLYALFTIISAHRKRLPPQPRGAWPVIGHLPLLTAKEPNHTTLGKLADVYGPIFMLRLGVHRTLIVSGWEVARECFTVNDKAFASRPKFAAAQLLGYDYAMFGLSPYGSHWSHLRKIATLELLANHRLEKLRHIPRSEVQSSIQKLHQLCKSSDGGKKALVEMETWFGEIALNTIFRMVVGKRFTTAFEGSGGAEYRHALEDFFNLFTVFVPSDLFPFLKWFDFGGHKKAMKKTAKVMDEMLDKWLTEHRERRNSGEVAPEEQDFMHVMLSFIDNEEFSGYDADTVIKSTCLALILGGFHTTTTEMTWALSLLLNREEAYEKLQKELDQHVGRDRVVRESDLKNLVYLQAVVKETLRMYPAGQLSVPHESIEDCTVAGYHIPAKTRLWVNLYRLQRDPSVWENPNEFFPERFLTTQKNFDVKGRNPQLIPFGSGRRICPAVTFALQILHLSFARLLHEFEIGRPSEKPLDMEEIAALNITKKVPLKVVLTPRISTEVYE 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13838099 13840035 + CmoCh01G019410.1 Cmo01g01941 375424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01941 520 Pfam Cytochrome P450 38 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PANTHER CYTOCHROME P450 35 520 - -
Cmo01g01941 520 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 SUPERFAMILY Cytochrome P450 38 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01941 520 PANTHER CYTOCHROME P450 82C3-RELATED 35 520 - -
Cmo01g01941 520 Coils Coil 334 354 - -
Cmo01g01941 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Cmo01g01941 520 Gene3D Cytochrome P450 30 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01941 - - - csv:101208091 761.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01938 Cmo-Chr1:13822365 Cmo01g01941 Cmo-Chr1:13838099 0 dispersed
Cmo01g01939 Cmo-Chr1:13828458 Cmo01g01941 Cmo-Chr1:13838099 0 dispersed
Cmo01g01941 Cmo-Chr1:13838099 Cmo09g00186 Cmo-Chr9:830375 0 dispersed
Cmo01g01940 Cmo-Chr1:13832605 Cmo01g01941 Cmo-Chr1:13838099 0 tandem
Cmo01g01941 Cmo-Chr1:13838099 Cmo01g01942 Cmo-Chr1:13841183 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g851 . Blo12g00926 . . . . . . . . . Cma09g00186 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04162 Chy04g00553 . . . . . . . . . . Cmo01g01941 . . . . . . . Bhi09g02039 . . . . . . Cla05g01982 . . . . . . . . . Cme04g00661
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01941 Cmo_Chr01 FPKM 0.816609 0.0 0.398777 0.0 4.662643 5.001132 3.663097 49.940842 54.037262 50.017715