Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01942 ATGGAACTTCCCCACACCTCCTCATCGGCCGCCGTCGCCGGAATCTTCGCCCTTCTCATCTTCCTCTATGTCCTCTTCAACATATCTAAAAGACTCAGCTCTAATCCAAAGAGACTACCACCAGAACCCGCCGGAGCATGGCCGGTGATCGGCCACCTCCATCTACTGAGCACAACAGAGCCAGCCCACATAACGTTGGCCAAAATGGCGGATGTGTACGGACCAATCTTTACATTAAGGTTGGGCATGCACAAAGCCTTGATTGTAAGCAGCTGGGAGATAGCCAGGGAATGTTTTACGACAAAAGACAGAATCTTTGCCTCTCGACCAAAGCTTGTCGCCTCAAAGCTGCTTGGTTATAACTACGCCATGATGGGGTTGAGCCCTTATGGCTCACACTGGCGCCATGTTCGTAAAATGGCCACTCTCGAGCTCTTCACGAACCATCGCCTGCAGCAGCTCCAACACGTTAGGGTGTCGGAGGTTGATAGTTCGATTAAGAAGCTGTATGAGTTATGTGGTAATGGAAAGGAGAAAGCTTTGGTGGATATGACGACGTGGTTTGGTGATATTACTCTCAATACCATATTCAGAGTAGTGGTCGGAAAACGATTCTCGACGGCGGTGGAGGGTGGCGGTAATGATGAGTATCGGAAGGCGTTGAGGGAATTCTTTGAATGGTTTGGAGTGTTTGTTCCTTCGGATTCATTTCCGTTTCTTAAATGGTTGGATTTGGGAGGACATGAGAAGGCCATGAAGAAGACGGCGGAGGTTTTGGATGAAGTGTTTGATAAATGGGTGGAAGAGCGTCGGAAAATGAGAGCTTCCGATGAAGCGAAGACGGCGGAGCATGATTTCATGGATGTCATGCTTTCTACTGTGAAGGATTGTGATGAACTTTCGAGCTATGACGCTAATATCGTTATCAAATCTACGTGTTTGGCACTTATATTGGCAGGTTCGGATACGACAACAGTTACGATGATATGGGCTCTTTCTTTACTACTCAACAATCCCGAAGCACTCGAGAAAGCTCGGCTTGAATTAGATGAACAAGTTGGGAGAGAAACACACGTGAAAGAATCAGACGTGAAAAATCTTATATATCTCCAAGCAATTGTGAAGGAAACGTTACGTTTGTATCCTGCTGGGCCACTTGGCATCCCTCATGAATCCATAGAGGATTGTACTATTAATGACTACCATATTCCGGCGGGGACACGTTTGATGGTAAACATTCAGAAACTTCAAAGAGACCCACGAGTATGGGAAGATCCTTGTGAATTTCGACCAGAGAGATTCTTAACAAATCACAGAGATTTCAATGTTAGAGGACAAAGTCCTGAGTTCATACCCTTTGGAAACGGACGGAGGATGTGTCCTGGAATCTCATTTGCCCTTCAAATTATGCATTTAACGCTTGCAAATTTACTTCATGGATTTGAGATTGATAGGCCATCTAAAGAGTTATTGAATATGGAAGAAAGCGCTGGTCTGACGAGTATTAGAAAAGACCCACTCGAGGTGGTTTTAAGTCCACGTCTCCGTCTTTGA 1554 45.69 MELPHTSSSAAVAGIFALLIFLYVLFNISKRLSSNPKRLPPEPAGAWPVIGHLHLLSTTEPAHITLAKMADVYGPIFTLRLGMHKALIVSSWEIARECFTTKDRIFASRPKLVASKLLGYNYAMMGLSPYGSHWRHVRKMATLELFTNHRLQQLQHVRVSEVDSSIKKLYELCGNGKEKALVDMTTWFGDITLNTIFRVVVGKRFSTAVEGGGNDEYRKALREFFEWFGVFVPSDSFPFLKWLDLGGHEKAMKKTAEVLDEVFDKWVEERRKMRASDEAKTAEHDFMDVMLSTVKDCDELSSYDANIVIKSTCLALILAGSDTTTVTMIWALSLLLNNPEALEKARLELDEQVGRETHVKESDVKNLIYLQAIVKETLRLYPAGPLGIPHESIEDCTINDYHIPAGTRLMVNIQKLQRDPRVWEDPCEFRPERFLTNHRDFNVRGQSPEFIPFGNGRRMCPGISFALQIMHLTLANLLHGFEIDRPSKELLNMEESAGLTSIRKDPLEVVLSPRLRL 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13841183 13843091 + CmoCh01G019420.1 Cmo01g01942 375425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01942 517 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Cmo01g01942 517 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 Gene3D Cytochrome P450 25 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 SUPERFAMILY Cytochrome P450 40 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 Pfam Cytochrome P450 41 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01942 517 PANTHER CYTOCHROME P450 82C3-RELATED 37 516 - -
Cmo01g01942 517 PANTHER CYTOCHROME P450 37 516 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01942 - - - csv:101208335 788.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01940 Cmo-Chr1:13832605 Cmo01g01942 Cmo-Chr1:13841183 0 dispersed
Cmo01g01942 Cmo-Chr1:13841183 Cmo09g00186 Cmo-Chr9:830375 0 dispersed
Cmo09g00185 Cmo-Chr9:827782 Cmo01g01942 Cmo-Chr1:13841183 0 dispersed
Cmo01g01941 Cmo-Chr1:13838099 Cmo01g01942 Cmo-Chr1:13841183 0 tandem
Cmo01g01942 Cmo-Chr1:13841183 Cmo01g01943 Cmo-Chr1:13844429 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g854 . . Bda01g00557 . . . . . . . . Cma09g00185 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01620 Csa03g04164 Chy04g00550 . . . . . . . . . . Cmo01g01942 . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00651
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01942 Cmo_Chr01 FPKM 0.597222 0.355467 1.230885 0.507211 3.863842 2.947535 0.742179 1.245492 2.602964 1.719597