Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01943 ATGGAACAGCTGCCTCTCGCCGGAATAATCTTCGCCCTTCTCTTCTTTCTCTATGCTCTCTTCACTATATCCCGGAGATCCGCCGCTCATCGGAAGAAACTCCCACCGGAGTGCGGTGGCGCCTGGCCGGTGATCGGCCACCTTCATTTGCTAAGTACAAAAGAGCCAACTCACATAACCCTTTCAAAATTGGCTGATAAATACGGACCAATATTTACATTTCGGTTCGGTATGAAAAAGGCCTTGATTGTGAGCAATTGGGAAATAGCAAAAGAGGTTTTTACTACAAAAGACAGAATCTTTGCCTCTCGACCAAAGCTTGCAGCCTCAAATCTATTGGGCTACGACTATGCCATGATGGGGTTGAGCCCTTACTCTCCACATTGGCGCCATGCGCGCAAGATAGCCACTCTTGAGCTCCTCACAAACCACCGCCTCGAGCAGCTCCAACACATCAGAGCGGCGGAGGTTCAAAGATGGAACAACAAACTATATGAATTATGGGTCAAAAGAAAAGACGAAAAATTGGTGGTGGAAATGAAGAATTTGTTCGCTGACATAACGCTCAACACCATATTCATGATGGTGATCGGAAAGCGATTCTCCACCGCCTTCGACGGCCACGACGGTGAAGATTGCCAAAAGGCATTGAGGGATGTCTTTGAATTGTTTGGAATGTTTGTTCCATCGGATTCGTTTCCATTTTTGTGGTGGTTGGACTTCGGAGGACATCAAAAACGCATGAAAAAGACAGCAAAAATACTCGATGGGGCGTTCGAAAAGTTCCTCAAGGAGCATCGCCAGAGGAGAGATCGTGTTAAACTTGAGATGAAGGAAGAAGACTTCATGGATGTCATGATCTCTAGGGTTAATGAAGATGGAAACCTTTTCAGCTTCGATGGTGACACAGTCGTCAAAGCTACTTGCTTGAATATGATATTGGGTGGATTCGATACTATGACGGTAACAATGACGTGGGCGCTTTCGTTACTCCTCAACAATGAAGAATCGCTTAAAAAGGCCCAACTTGAATTAGACGAACAAGTCGGGAGGGAAAGACAAGTACAAGAGTCTGATGTGAAAAATCTACCATATTTACAAGCTATTGTTAAGGAAACTCTACGGTTGTACCCAGCTGCGCCACTCTTAGTCCCTCATGAATCTATGGAAGATTGTACCGTTGCGGGTTACTATATACCTGCTGGGACACGTCTTATAGTTCATGCTCAAAAGCTTCAAAAGGACCCATCTTTTTGGGAGAATCCGTATGAATTTCGCCCGAAAAGATTTCTAACTAGTCAAAAGAATGTTGATGTTAGAGGACAGAGTCCTCAATTGATACCGTTTGGAAATGGACGAAGGATGTGCCCTGGAATCTCATTTGCCCTCCAAGTTATGCATCTTACACTTGTGAACTTGCTTCATGGGTTTAATATCGGTAGGATGTCAGAAGAACCACTTGACATGGAGGAGAGTTTTGGATTGACTAGTGTTCGAAAAGCTCCACTCGAGGTTGTTTTATCTCCTCGCTTACCTGCTCATGTTTACGAGTAA 1554 44.66 MEQLPLAGIIFALLFFLYALFTISRRSAAHRKKLPPECGGAWPVIGHLHLLSTKEPTHITLSKLADKYGPIFTFRFGMKKALIVSNWEIAKEVFTTKDRIFASRPKLAASNLLGYDYAMMGLSPYSPHWRHARKIATLELLTNHRLEQLQHIRAAEVQRWNNKLYELWVKRKDEKLVVEMKNLFADITLNTIFMMVIGKRFSTAFDGHDGEDCQKALRDVFELFGMFVPSDSFPFLWWLDFGGHQKRMKKTAKILDGAFEKFLKEHRQRRDRVKLEMKEEDFMDVMISRVNEDGNLFSFDGDTVVKATCLNMILGGFDTMTVTMTWALSLLLNNEESLKKAQLELDEQVGRERQVQESDVKNLPYLQAIVKETLRLYPAAPLLVPHESMEDCTVAGYYIPAGTRLIVHAQKLQKDPSFWENPYEFRPKRFLTSQKNVDVRGQSPQLIPFGNGRRMCPGISFALQVMHLTLVNLLHGFNIGRMSEEPLDMEESFGLTSVRKAPLEVVLSPRLPAHVYE 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13844429 13846252 + CmoCh01G019430.1 Cmo01g01943 375426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01943 517 SUPERFAMILY Cytochrome P450 41 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PANTHER CYTOCHROME P450 32 517 - -
Cmo01g01943 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Cmo01g01943 517 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 Pfam Cytochrome P450 36 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 Gene3D Cytochrome P450 20 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS E-class P450 group I signature 408 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g01943 517 PANTHER CYTOCHROME P450 82C3-RELATED 32 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01943 - - - mcha:111009700 761.525
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01943 Cmo09g00179 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01943 Cmo-Chr1:13844429 Cmo09g00183 Cmo-Chr9:816745 0 dispersed
Cmo09g00187 Cmo-Chr9:833698 Cmo01g01943 Cmo-Chr1:13844429 5.40E-126 dispersed
Cmo09g00188 Cmo-Chr9:839943 Cmo01g01943 Cmo-Chr1:13844429 1.50E-101 dispersed
Cmo01g01942 Cmo-Chr1:13841183 Cmo01g01943 Cmo-Chr1:13844429 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g857 . Blo12g00923 Bda01g00555 Bda03g00240 Bpe02g00413 . . . . . . Cma09g00183 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01624 Csa03g04166 Chy04g00549 . . . . . . . . . . Cmo01g01943 Cmo09g00179 . . . Car09g00162 . . Bhi09g02056 . . . . . . . . . . . . . . . . Cme04g00637
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01943 Cmo_Chr01 FPKM 4.628652 4.505345 4.310122 5.39056 12.459048 13.688826 11.383782 6.729845 6.707627 6.916017