Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01947 ATGTCGAAAAGCAGCAACAGTGTATCAATCTCGGTTTCTGACAATGAGTTGGACGACTTGGAAAGGATGCGTGTTCGAGCTCGGAGGAAGCGAAAAAAACCAGGGAATCGAGACAAGAATGAGTTGGCTCGTCGAGTTTTTAGAATAATTTTGAAGTATTGGGTGGTTGTTTTCTTCCTTCTTGCTTTGAGTTTGCTTCTGTTTGAGGCAACGAGAATTGGTCGGAAATCAAGGCTGGAGACGAAATCGGAAGTTGCTGGCTCGACGAGACCAACGATGGACGAGCCGGTAATCGAAACTGAGAAGAAGTCGGATTTAGACAGTAAACCAGACGGGAATCTGAATAAACTCGATCCTGTTACTCGGAAGGTCGCCGGAGTAAGAGAACGTTGCTTGAAACTTCTTCCACCAAAAGAACTTGAGCAATTGGATATTCCTGTACGCGACAGTTCGCCAGTTCCAGAGATTGATGTGCACTACATAACTGATAATGACAGTTCATTGTTAGTAGATAAAGCTTCCTTGTTCCAACAGAGCATGAATGGAACAAGATTTAATCTGTTTACTGGATACCAGACTCTCAACCAGAGAGAAGAAAGTTTTCAGGCGAATAGAACTGTTGAGGTACACTGCGGTTTTTACTGTGATAATGGGGGTTTCAGAATTTCTAATGAAGATAGAAATTATATGCACAAATGCTCCCTTGTGGTGTCAACATGTGCATTTGGCGGTGGAGATGATCTTTATCAACCGATTGGAATGTCAGAGGCATCACTTCGCAAGGTTTGCTATGTTGCATTTTGGGATGAAATCACTTTAAGTGCACAAGAGTTAGTGGGCCATGTTATTGGTGAGGATGGATTTATTGGAAAGTGGCGTGTTATAGTTGTGAGGGATCTTCCTTTCACTGACCAAAGATTGAATGGAAAAATCCCCAAGATGTTGGGTCATCGTCTCTTCCCTAACGTCAAGTACTCGATTTGGGTAGATTCGAAGTCTCAATTCCGGAGGGATCCATTAGGAGTATTTGAAGCTCTTCTTTGGCGTTCAGATTCTGAACTTGCAATATCACAGCATGGAGCTCGTAGTAGTGTCTATGATGAGGCTGGAGCTGTCGTCAAGAAACATAAGGCCACCCCGGAAGAAGTTGAAGTGCAGATTACACAGTACCGTCATGATCACTTCCCAGATGACAAGAGGTTTAATGGACATAAAGCTCTGGCAGAGGCTTCTGTCATTGTTAGGGAGCATACGCCAGTGGTGAATCTGTTGATGTGCCTCTGGTTCAATGAGGTGGTGCGGTTTACTTCAAGGGACCAGCTGAGCTTCCCATATGTGCTGTGGCGGCTGAAAGCTGTAAAGAAAATTAATATGTTCCCCGTTTGCATTCGCAAAGATCTTGTCAATAGTATGGGCCACATTCGCAAGGCTAAGCCTCTGAATGTAAGCCGATTATCTTGA 1461 43.94 MSKSSNSVSISVSDNELDDLERMRVRARRKRKKPGNRDKNELARRVFRIILKYWVVVFFLLALSLLLFEATRIGRKSRLETKSEVAGSTRPTMDEPVIETEKKSDLDSKPDGNLNKLDPVTRKVAGVRERCLKLLPPKELEQLDIPVRDSSPVPEIDVHYITDNDSSLLVDKASLFQQSMNGTRFNLFTGYQTLNQREESFQANRTVEVHCGFYCDNGGFRISNEDRNYMHKCSLVVSTCAFGGGDDLYQPIGMSEASLRKVCYVAFWDEITLSAQELVGHVIGEDGFIGKWRVIVVRDLPFTDQRLNGKIPKMLGHRLFPNVKYSIWVDSKSQFRRDPLGVFEALLWRSDSELAISQHGARSSVYDEAGAVVKKHKATPEEVEVQITQYRHDHFPDDKRFNGHKALAEASVIVREHTPVVNLLMCLWFNEVVRFTSRDQLSFPYVLWRLKAVKKINMFPVCIRKDLVNSMGHIRKAKPLNVSRLS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13868303 13872025 - CmoCh01G019470.1 Cmo01g01947 375430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01947 486 PANTHER ALKALINE CERAMIDASE-RELATED 3 481 IPR006852 -
Cmo01g01947 486 Coils Coil 10 30 - -
Cmo01g01947 486 MobiDBLite consensus disorder prediction 95 112 - -
Cmo01g01947 486 Pfam Protein of unknown function (DUF616) 181 473 IPR006852 -
Cmo01g01947 486 PANTHER OS01G0749100 PROTEIN 3 481 - -
Cmo01g01947 486 MobiDBLite consensus disorder prediction 79 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01947 - - - bhj:120083005 803.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01947 Cmo-Chr1:13868303 Cmo12g00682 Cmo-Chr12:4715804 1.09E-70 dispersed
Cmo01g01947 Cmo-Chr1:13868303 Cmo13g00662 Cmo-Chr13:6961475 3.14E-58 transposed
Cmo01g01947 Cmo-Chr1:13868303 Cmo18g00347 Cmo-Chr18:2269461 1.40E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g870 Blo01g01548 Blo12g00917 . Bda03g00247 . . Bma04g00195 . . . . . Car01g01468 . . . . . . . . . . . . . . . . . . . . . Cone20ag0159 . Csa04g02345 Chy04g00541 . . . . . . . . . . Cmo01g01947 . . . . . . Cpe02g00147 . . . . . . . . . . . . . . . . Chy07g00077 Cme04g00631
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012789 1 5 1 1 0 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 1 0 0 3 2 1 1 3 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01947 Cmo_Chr01 FPKM 15.508904 14.058817 19.54244 19.118635 20.429289 21.812334 22.93874 36.667713 36.671558 35.855415