Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo01g01950 | ATGCGCTCCGCCCTCCTCCTCCTCCTCCTCCTCGCCGTCTGCGCCGCCTCCCATGCCGCAATATTCAGAGAAGCCCCCCAATTTTTCAATTCCCCGGACTGCCCTTCCCTGGCCGATGATCTGGAGAAACGCAATGAGAAGGGACAACACCACTGCTTCAATCATGCCGTCCACGTGGCGATGACGTTGGACACCGCTTACATACGTGGCTCCATGGCCGCCGTCCTTTCCGTCCTTCAACACTCCTCCTGTCCTCAAAGCGTAATTTTCCACTTCGTCTATTCCGCATCCGCCAACGCGTCATCTCTTCACGCCACCGTCTCCCATTCATTCCCTTACCTTAAATTCCAACTCTACCCTTTCGACGACGAAGCGGCCTCGCGATTGATTTCCACGTCAATCCGATCCGCGTTGGACTGTCCGTTGAACTACGCGCGTAGCTACTTAGCCAACCTCCTTCCCACTTGCGTCGCTCGAGTCGTGTACCTTGACTCGGACCTGATCCTCGTCGACGACATTGCCAAACTCGCCGCCCATCCACTCGGCGGCGAGTCAGTCCTCGCCGCGCCGGAGTACTGCAACGCCAATTTCACCGCCTATTTTACGCCGTCGTTTTGGTCCAACCCGTCTTTGTCCTTAACATTCGCGAACCGGAAGGCGTGTTACTTCAACACGGGTGTTATGGTGATCGATCTGGACCGGTGGAGGGCCGGGGACTACACGACCAAGATTGAGGAATGGATGGAATTGCATAAGAGACTGAGAATCTACGAATTGGGGTCGTTGCCTCCGTTTTTGTTGGTGTTCGGCGGGGGGATTTCTCCGGTGGATCACCGGTGGAACCAGCACGGGCTCGGTGGCGACAATATCAGAGGACTCTGCAGGGATTTGCACCCGGGTCCGGTCAGTTTGTTGCATTGGAGTGGCAAAGGAAAACCGTGGGCTCGATTGGACGCGAACCGGCCCTGCCCTTTGGACGCTCTTTGGGCTCCCTACGATTTGTTACAGACCCCATTTTCAATCGATTCTTGA | 1032 | 56.1 | MRSALLLLLLLAVCAASHAAIFREAPQFFNSPDCPSLADDLEKRNEKGQHHCFNHAVHVAMTLDTAYIRGSMAAVLSVLQHSSCPQSVIFHFVYSASANASSLHATVSHSFPYLKFQLYPFDDEAASRLISTSIRSALDCPLNYARSYLANLLPTCVARVVYLDSDLILVDDIAKLAAHPLGGESVLAAPEYCNANFTAYFTPSFWSNPSLSLTFANRKACYFNTGVMVIDLDRWRAGDYTTKIEEWMELHKRLRIYELGSLPPFLLVFGGGISPVDHRWNQHGLGGDNIRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLQTPFSIDS | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 13881139 | 13882170 | - | CmoCh01G019500.1 | Cmo01g01950 | 375433 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo01g01950 | 343 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 58 | 323 | IPR029044 | - | |
| Cmo01g01950 | 343 | PANTHER | GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN | 12 | 343 | - | - | |
| Cmo01g01950 | 343 | Pfam | Glycosyl transferase family 8 | 58 | 316 | IPR002495 | GO:0016757 | |
| Cmo01g01950 | 343 | PANTHER | GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED | 12 | 343 | - | - | |
| Cmo01g01950 | 343 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 57 | 334 | IPR029044 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo01g01950 | Cmo12g00442 | CCT | |
| Cmo01g01950 | Cmo05g00225 | CCT | |
| Cmo01g01950 | Cmo05g00225 | ECH | |
| Cmo01g01950 | Cmo12g00442 | ECH | |
| Cmo01g01950 | Cmo09g00172 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g01950 | Cmo-Chr1:13881139 | Cmo07g00774 | Cmo-Chr7:3499573 | 0 | dispersed | |
| Cmo01g01950 | Cmo-Chr1:13881139 | Cmo12g00442 | Cmo-Chr12:2713840 | 0 | wgd | |
| Cmo01g01950 | Cmo-Chr1:13881139 | Cmo05g00225 | Cmo-Chr5:964752 | 0 | wgd | |
| Cmo01g01950 | Cmo-Chr1:13881139 | Cmo09g00172 | Cmo-Chr9:775314 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo01g01950 | K20893 | - | csv:101211531 | 626.32 |