Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01954 ATGGAGAAATCGTCGCAGAGGGAGAACATCCTTTTGGGTTATTCGCTTCAGAGATCATTCACGAATCATTCTTCATCGCCGAGAGCTCCGAATCGGGACTCCGACGATGTTGATTTTCACGACGTGTTCGGTGGCCCTCCGAGAAGGCGGTCGTCGGCTCATGAAACGCGGTACAGCTTCTCGGAAACGGCGGGTTCTTTCGCATTGAAAGGCGGCGGCGATAACGCACCGCCGGGCCGGAGTAGTTCCTGGTCCTGTTTGAATGAGATACCGGTGTTCGGAGAAGACAGTCCTCACGGGCGAAGATTTTCGAGCAATGATTTTTACGATGATATCTTTAAGGGCGATGAATCCGCGACTCCTCCTCGCCGGCATGAACTTGACATTTTCTCTTCGATTCCTGGTTCGAGGGTCTCAAGTCCTGCTAGGCAACTTCCGCCGCGGGCAGAGCCATTCGGAAGTTCTTCCCTCCCAGCAGAATTAAGAATTTTATTGGCGGATGATTTTCTTAGCTTTGATGAATGCTTCTTTCATGTGCATTGGGTATTTGTTAATATCTTGCTTCTGGTTCTTCTGGTTTGTGCCAGCCTACCATCTAGCTTGGCTAAAGGGACTGATCTGCCAGCGTTGGGATCGAACAATTCGAGCCCCTTAAGAAACAAGGTTGTTGTGTCAAATGGAAGCCATACAAATGCTTCTAGGTTCACTCTGTCTAGATTTTCTTCCAGCACTTCGAGCCATCGTTTCGAGGATCTTAAAAGTGATCACAATTTGTTGGATCGGCCTGGCATTCTCTCATCTGAATTCCAACCTCTTAGCAGCGCCGAGATGCCATCCTTCAGAAAGTCCGATAATGCGTCGAATAGGAACAGTTCAACGAAGGGAGAAGATAGTGTAGAAGATTCAAATGGTGGTGGTCAGTTTCAATTCCATTTCTCAATTTACAAATGGGCAAGCAAAGGGGTGCCTCTAATGATGCCACTGAGAGGAGGGAACGGATCGAGTTTAAGAGAGAAGACTTTGCTTAGGAGAAGCTCAAGCTCGACGAATAGAGTCGTGAAGGAGATGAATGAAAAGCCTGATCGAAGTTTCGAGGAAAAACTTTCATCTGCACCTTCAGCTAACTTGAGCAGACAAAGTTCTCGTAAGGATGTCGACGCTGATAACATCACTCAGCAAGCAAAGCTCAAGAAAGTTTCAAGTGAAAAAGCAGAGAAAAAGATGAGTTCGACAACAAATGAAGATCGAAACCATGTGGCTAAATCTCTAAGTTCCTTCCTTCTCTACAGCGATGGTGAACAAAGTGAAGATGGGATATCGGAAGAGTATCGACAAGGAGACATCACGGCGCAAAGTGACAAGAAATCAGCAAATCTTTCTGAGCTAACTAGTAGCTCAAAGAAACTGGACAAACAAACTTCACTGAGAAATTCAAAAGTGAAAAATCCAAGTTTCCTAAGCTCAGACACGGAATCTCGACAAAACATTGACAGAAAGAAAGCTGGAGGAAAAATCTCGGAGTTCGTCAAGATTTTCAACCACGAACCTGCATCGAAATCCCGAGACGTAGTTGATTTGGGAAATGATAGCTCTACAAGGAAGCAGGAAAGTGCTTCAAAAGCTCAAACACAGGCAACTGTCAATAAAATAAGCAAGGAAGAGAAATCCAAGTTGAATCACAATACAGATGCTTCCATCAAGGTAGATGATGTTTCCAAGCAGTCGGTGCATGTTCACACTAATAGCTCTACTTCTTCGAAAGAGGGTAGTCCAGCACCCAACACTGGTCAGTCCTGCATCTGTGCTGTGTTCTTCATATTTTTCTTTTCGATTCATGTTCGTAATGTCTCCAAGTCTACAGTTCCAGATGTGGAGGAGCTGTTCCAAGAGAATTTCTCAGTAAAAGAGTTACCACAAGACTATGAGGATTCGAGAGAAACGAATAATGTTCGTGAAGAATTACAAGATATCGATACCAAAATACGACAATGGTCGAAAGGGAAGGAAGGGAATATACGTTCGCTACTGTCAACTTTGCAATATGTTCTTTGGCCTAAGAGCGGATGGAAACCTGTTCCTCTCGTCGATATAATCGAAGGAAATGCAGTCAAAAGATCTTATCAGAAAGCTTTGTTATACCTACACCCTGATAAGCTACAACAGAAGGGTGCTTCAGCAGATCAAAAATATATTGCAGCAAAAGTTTTTGAGATATTGCAGAATCAAGAGCTGTGCTTGGCTCGGATTTTTGAAGTTTTGAACGTTTTAAACGAGGGTAGGAGGCTTGGGCTCATTTCAATACACTGGGAGGATTATGATATGAAATCACAGCATTATAGGTGA 2343 44.09 MEKSSQRENILLGYSLQRSFTNHSSSPRAPNRDSDDVDFHDVFGGPPRRRSSAHETRYSFSETAGSFALKGGGDNAPPGRSSSWSCLNEIPVFGEDSPHGRRFSSNDFYDDIFKGDESATPPRRHELDIFSSIPGSRVSSPARQLPPRAEPFGSSSLPAELRILLADDFLSFDECFFHVHWVFVNILLLVLLVCASLPSSLAKGTDLPALGSNNSSPLRNKVVVSNGSHTNASRFTLSRFSSSTSSHRFEDLKSDHNLLDRPGILSSEFQPLSSAEMPSFRKSDNASNRNSSTKGEDSVEDSNGGGQFQFHFSIYKWASKGVPLMMPLRGGNGSSLREKTLLRRSSSSTNRVVKEMNEKPDRSFEEKLSSAPSANLSRQSSRKDVDADNITQQAKLKKVSSEKAEKKMSSTTNEDRNHVAKSLSSFLLYSDGEQSEDGISEEYRQGDITAQSDKKSANLSELTSSSKKLDKQTSLRNSKVKNPSFLSSDTESRQNIDRKKAGGKISEFVKIFNHEPASKSRDVVDLGNDSSTRKQESASKAQTQATVNKISKEEKSKLNHNTDASIKVDDVSKQSVHVHTNSSTSSKEGSPAPNTGQSCICAVFFIFFFSIHVRNVSKSTVPDVEELFQENFSVKELPQDYEDSRETNNVREELQDIDTKIRQWSKGKEGNIRSLLSTLQYVLWPKSGWKPVPLVDIIEGNAVKRSYQKALLYLHPDKLQQKGASADQKYIAAKVFEILQNQELCLARIFEVLNVLNEGRRLGLISIHWEDYDMKSQHYR 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13899900 13902986 - CmoCh01G019540.1 Cmo01g01954 375437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01954 780 PANTHER J DOMAIN-CONTAINING PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1 1 741 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 398 414 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 330 418 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 434 499 - -
Cmo01g01954 780 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 741 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 575 593 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 273 303 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 530 549 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 29 56 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 450 491 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 519 593 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 550 574 - -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 18 57 - -
Cmo01g01954 780 SUPERFAMILY Chaperone J-domain 644 741 IPR036869 -
Cmo01g01954 780 MobiDBLite consensus disorder prediction 338 353 - -
Cmo01g01954 780 Gene3D DnaJ domain 648 743 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01954 - - - cmax:111480409 1222.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01954 Cmo09g00167 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01954 Cmo-Chr1:13899900 Cmo04g02503 Cmo-Chr4:18412155 6.00E-31 dispersed
Cmo01g01954 Cmo-Chr1:13899900 Cmo09g00167 Cmo-Chr9:755161 1.64E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g905 . . Bda01g00541 . . Bpe04g00208 Bma04g00202 Bma01g02308 . . Cma01g01891 Cma09g00172 Car01g01475 . . . . . . . . . . . . . . . . . . Cone4ag1897 . Cone17ag1326 . Lsi04g01642 Csa03g04186 Chy04g00532 . . . . . . . . . . Cmo01g01954 Cmo09g00167 . . . Car09g00152 . Cpe02g00141 . . . . . . . Cla05g01961 Cam05g2110 Cec05g2121 Cco05g2174 Clacu05g2099 Cmu05g1976 Cre05g2095 . . . Cme04g00612
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005505 1 5 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01954 Cmo_Chr01 FPKM 11.099885 12.495612 6.964909 7.019811 21.100935 19.69191 20.274458 4.800841 4.443444 4.065833