Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01955 ATGCCATCCTATATGTCAAAACTACGAGCACCGGTTCACTTTCTAGGGTGGGAAGGTGGATTTAAAAGTTCACTGGAGTTTCTTTTTGGGCAACAGAAACTCTTGTGTGGCAGTTCAAGCCTGTTTCACTCAGTACCTTATTCCTCACTCACAGAATTGCATGCACTCTTAAGACCTGGCACTATTTCTGGTTCTAGTTCAGAGCTAGTTAATAGTAGGAGGAATATCTCTGTTCTTGGAGCAATTTCTCGCACATTTTCTATTCCTTCTGTGTCAGGCCCTGCGTTACAGACCTGTGGGTATCACATTGATTGTGCCATTGCTGAATCCAATCAATATTCAACTCGCAGCAAGTTTCAAGACAACCCAATGGCTGCTTGTGGTTCTAGAGCTGGACTTGGTGAATGTTCTCTCGAGAATCTAAGTTTTAGGATTGCACGCACCTCTCCTCCAGCGATCAGTCCTAGTATTTGTTTCAACAAAAGAAGCGTTGATTGCTGCCCAAAAGCCAGCATGAGTTTGAAAAATCAGGAGCAGCCTAGCAATAATGTGATATATGGATACTTTACATACAATGTTGCAAAAAGGTTTTGCAGCAGTTACCTACATGCTGGGTTGGGAGCAAGGGATCTTCATAGTTCGTCCACTTCTTCCCTAGCTGCTGGTTCTGCCCCCAATTTGTCATTTGATAATTCTGCACGGGAGGAACAACTTGCCAACTCTACTGATTCATCCGCACAAAAGATTCCGAAAGGCAAATCGATGAAACTGGTTTCTGGGTCTTGCTATCTGCCCCACCCTGATAAAGAAGATACTGGTGGAGAGGACGCTCACTTTATTTGTGTGGATGAACAAGCTATAGGGGTGGCTGATGGTGTGGGTGGTTGGGCAGATCTTGGTGTTGATGCTGGACAGTATTCCCGAGAACTCATGTTTAATTCAGTTAATGCAGTTCAAGAGGAGCCCAAGGGCTCAATTGATCCAGCTAGAGTCTTGGAGAAGGCTCACTCGAAAACAAAAGCCAAAGGCTCCTCCACTGCCTGTATCATAGCGCTTACAGAACAAGGGCTCCATGCAATCAATTTAGGAGACAGTGGATTTATGGTGGTTAGAGACGGATGCACAATATTCAGATCTCCTGTGCAGCAGCATGATTTTAACTTCACCTTTCAATTGGAGAGTGGAAACAATGGTGATTTACCTAGCTCTGGACAGGTCTTCTCGGTCCCTGTTGCTCCTGGAGATGTCATAATTGCTGGCACTGATGGACTCTTTGATAACTTGTACAACAACGAGATCACCGCAGTGGTGGTTCATGCCATGAGAGCTGGCTTAGGCTCTCAGGTGACTGCCCAGAAGATAGCTGCTCTTGCACGCCAGCGAGCTCAAGATAAAGACCGACAAACACCTTTCTCCACTGCTGCTCAAGATGCTGGGTTTCGGTACTACGGAGGCAAGCTTGACGACATTACCGTCGTCGTGTCATATGTTGCCAGCTCCAACGACAACATTTCATTGAACTATCTTAACTCTTTACATGTTGAAGAGTGGATGACCTCTTTTGTAAGTGAAAAAAATCAGGGGCGTGAGCCATCCCCAGGTTTGAGCGGTTGTTTCTCTGCTTTCTACTTCCATCTGAATCCTTTCTGTAACAGAAAACAGTCCCATTTTCTTTATTTATGGAATTGTAACGATCCCTTCCTTCTACTTCAAGGGAATGCCAAATCTCTAATTCCTAAAACATTCTCTGGTTGTTTCCCCTTGAAGTCTATACTCTCCTGCTTCACTCACTCCCCAGCTGCGCCTGATTTCTCCATGGCCGGCCGTAAAGACAAAGCTCAGTCTGCCCGCGTCTCTCGAATCGTCATCGCCATCGCAATCGGAGTTCTTGTTGGCTGTCTTTTTGCTTTCTTGTATCCTCATGGACTTTTCGCCTCTGATCTGCCTGTCCAAAACCGTCGCCTCGGCAAATCCGAGTTTCTGGTTCAGTCTTCTTCTCCTTGCGAATCGTCGGAGCGGTTCAAGATGCTTAAAGGCCACGTCGTTTCAATATTAGAGAAGAACTCCCAGTTGGAGAAGCGTATAAAGGATCTAACAGGGGAGCTGAGGATTGTGGAACAAACAAAAGATCATGCTCAGAAGCAATATTTGGCGCTCAGTGAAAATCACAAGGCTGGCCCATTTGGTACTGTCAAAGGTCTTAGAACCAACCCTACCGTAATCCCTGATGAATCTGTAAACCCTCGATTGGCGAAGCTCCTGGAGAAAGTTGCTATCCAGAGGGAGCTGATTGTGACACTTGCGAATTCTAATGTACAACCCATGCTGGAGGTTTGGTTTAAGAGTATCCAGAAGGTCAGTATACCGAATTATTTAGTCGTGGCTCTGGATGACCAGACGGAAGAATTCTGCAAATCCCATAATGTTCCTGTCTACACGAGAGATCCAGACAAGAGTGTTGATTTAATCGGAAAGGAAGGAGGCAACCACCAAGTCTCGGCATTGAAGTTTCGGATTTTGAGGGAGTTCTTGCAACTTGGATACAGTGTTCTTCTCTCAGACGTCGATATAGTCTACTTACAGAATCCTTTCGATCATCTTTACCGGGATTCAGATGTGGAGTCGATGAGTGATGGTCACAGCAATATGACAGCTTATGGATACAACGATGTATTTGATGAACCTGCCATGGGCTGGGCTAGATATGCACACACTATGAGAATATGGGTTTACAACTCTGGTTTCTTCTACATTAGGCCTACACTACCTTCGTTTGAGCTTTTGGATCGTGTCGCGACTCGGCTTTCTCAAGAAAAAGCATGGGACCAAGCTGTTTTTAACGAGGAACTCTTTTATCCTTCTCGTCCTGGACGTGATGGACTTCATGCCTCCAAGAGAACCATGGATATGTATCTTTTCATGAACAGTAAGGTACTCTTCAAGACTGTTCGTAAGGACCCGAAACTCAGACAGTTGAAACCCGTCATTGTTCATATTAATTACCATCCCGACAAGTATCCAAGAATGAAAGCAGTCGTCGAATTCTACGTGAACGGTCAGCAAAATGCTCTGGATTCGTTCCCAGATGGTTCTGAATGA 3099 45.27 MPSYMSKLRAPVHFLGWEGGFKSSLEFLFGQQKLLCGSSSLFHSVPYSSLTELHALLRPGTISGSSSELVNSRRNISVLGAISRTFSIPSVSGPALQTCGYHIDCAIAESNQYSTRSKFQDNPMAACGSRAGLGECSLENLSFRIARTSPPAISPSICFNKRSVDCCPKASMSLKNQEQPSNNVIYGYFTYNVAKRFCSSYLHAGLGARDLHSSSTSSLAAGSAPNLSFDNSAREEQLANSTDSSAQKIPKGKSMKLVSGSCYLPHPDKEDTGGEDAHFICVDEQAIGVADGVGGWADLGVDAGQYSRELMFNSVNAVQEEPKGSIDPARVLEKAHSKTKAKGSSTACIIALTEQGLHAINLGDSGFMVVRDGCTIFRSPVQQHDFNFTFQLESGNNGDLPSSGQVFSVPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGSQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVASSNDNISLNYLNSLHVEEWMTSFVSEKNQGREPSPGLSGCFSAFYFHLNPFCNRKQSHFLYLWNCNDPFLLLQGNAKSLIPKTFSGCFPLKSILSCFTHSPAAPDFSMAGRKDKAQSARVSRIVIAIAIGVLVGCLFAFLYPHGLFASDLPVQNRRLGKSEFLVQSSSPCESSERFKMLKGHVVSILEKNSQLEKRIKDLTGELRIVEQTKDHAQKQYLALSENHKAGPFGTVKGLRTNPTVIPDESVNPRLAKLLEKVAIQRELIVTLANSNVQPMLEVWFKSIQKVSIPNYLVVALDDQTEEFCKSHNVPVYTRDPDKSVDLIGKEGGNHQVSALKFRILREFLQLGYSVLLSDVDIVYLQNPFDHLYRDSDVESMSDGHSNMTAYGYNDVFDEPAMGWARYAHTMRIWVYNSGFFYIRPTLPSFELLDRVATRLSQEKAWDQAVFNEELFYPSRPGRDGLHASKRTMDMYLFMNSKVLFKTVRKDPKLRQLKPVIVHINYHPDKYPRMKAVVEFYVNGQQNALDSFPDGSE 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13903738 13909360 - CmoCh01G019550.1 Cmo01g01955 375438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01955 1032 MobiDBLite consensus disorder prediction 233 249 - -
Cmo01g01955 1032 ProSiteProfiles PPM-type phosphatase domain profile. 261 497 IPR001932 -
Cmo01g01955 1032 PANTHER GLYCOSYLTRANSFERASE 610 1032 - -
Cmo01g01955 1032 Pfam Stage II sporulation protein E (SpoIIE) 285 496 IPR001932 -
Cmo01g01955 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 762 1016 IPR029044 -
Cmo01g01955 1032 SMART PP2C_4 252 495 IPR001932 -
Cmo01g01955 1032 Gene3D - 400 503 IPR036457 -
Cmo01g01955 1032 SUPERFAMILY PP2C-like 262 494 IPR036457 -
Cmo01g01955 1032 Pfam Nucleotide-diphospho-sugar transferase 788 1005 IPR005069 -
Cmo01g01955 1032 Coils Coil 681 715 - -
Cmo01g01955 1032 SMART PP2C_SIG_2 271 497 IPR001932 -
Cmo01g01955 1032 PANTHER ARABINOSYLTRANSFERASE RRA3 610 1032 IPR044290 GO:0016757|GO:0080147
Cmo01g01955 1032 SUPERFAMILY Nucleotide-diphospho-sugar transferases 764 964 IPR029044 -
Cmo01g01955 1032 MobiDBLite consensus disorder prediction 233 252 - -
Cmo01g01955 1032 Gene3D - 269 389 IPR036457 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01955 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - csv:101205693 882.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00729 Cmo-Chr1:3759144 Cmo01g01955 Cmo-Chr1:13903738 1.47E-44 dispersed
Cmo01g01955 Cmo-Chr1:13903738 Cmo04g00831 Cmo-Chr4:4146394 1.32E-144 dispersed
Cmo01g01955 Cmo-Chr1:13903738 Cmo19g00661 Cmo-Chr19:7102099 0 wgd
Cmo01g01955 Cmo-Chr1:13903738 Cmo09g00166 Cmo-Chr9:744605 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g910 Blo01g01554 . . Bda03g00254 . . Bma04g00203 Bma01g02309 . . Cma01g01892 Cma09g00171 Car01g01476 . . . . . . . . . . . . . . . . . . . . Cone17ag1330 Cone20ag0148 Lsi04g01644 Csa03g04189 Chy04g00530 . . . . . . . . . . Cmo01g01955 . . . . Car09g00150 . Cpe02g00140 . . . . . . . . . . . . . . . . . Cme04g00610
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01955 Cmo_Chr01 FPKM 9.345834 8.296108 4.194438 4.188715 18.811686 16.486706 18.81708 5.521682 5.180843 2.597931