Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01957 ATGGTTGATTTGGAAAATTCTTCCCCGGTTGAGGTTTCCAGAGATGCTGGTTTATCTTCTTCAGGTTATATTGAACCAGTGGCGGTGGTGGCTCCGGCGAAGAAGAAACGGAACCTGCCTGGAATGCCAGATCCGGCGGCGGAGGTGATTGCTTTGTCGCCGGAGAGTTTACTGGCGACGAACCGGTTCGTATGCGAGATCTGCAACAAAGGTTTCCAGCGGGACCAAAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCGTGGAAGCTCCGACAGCGGACTAGCAATGAGGTTCGTAAGCGCGTCTATGTTTGCCCGGAACCTTCCTGCGTCCACCATAACCCGGCGAGAGCGCTTGGCGATCTCACTGGAATAAAGAAGCATTTCTGTAGAAAGCACGGCGAGAAGAAATGGAAGTGCGAGAGATGCTCGAAGAAATACGCCGTACAATCCGATTGGAAAGCGCACATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGCGGCACTTTATTTTCAAGGAGGGATAGCTTTATTACACATCGAGCCTTTTGCGATGTATTGGCGGAGGAAAGTGCTCGTGCTCAAACCCTAGCAGTTCAAAACTCTGAAGGAAAGGAATCCACCACTTCAAAAGCCGCCGTGACTTCTCCTCCTCCGCCGCCCCTAACACCGTCGACCACGGTGGTTTCTCCGGCGTTATCGATTCACAGCTCAGAGCTAGCTGATAATCCGATAAGACTTCCATCTGTTTCAACGCCTGCAGCGACGACATGCTTGACCTCCGCGTCTGTCAATAGTACCACAAATGCAAGCGCTAACGGCAGTAGCTCAAACAATGTGTTTGGAAATTGTACTGTTTTTGCCCCTTCTGCGTCAATTTCAGGGACGACCCAGATATCCCCAACATTACCACCACCCAGTTTACCCGCGTCAATAGTACCCTACGATTGCGCCTCTACTCGCCCTTCTGCTTCCGCAGTTAATCCCACATCGCTCTCTCTCTCCACATCTCTCTATCTTTCCTCTAAAGGATCCTCCCTCTTTGCCCCATCTGACCAAGATCGTCTGCAGTACACGTGGTCCACTCAACCGGCAGCCATGTCTGCCACCGCCCTGCTGCAGAAGGCAGCAGAAATGGGGGCAACAGCGTCTAATCCGTCGTTGTTTCGTGGCTTTGGGATGGCCACTTCTTCGACTGGTCAAGATACCTCTGCCACTATTCAATGGAGTAGGAATTTGAACCGAGATCATCGGAATGGCTCTTCGTTAACGGCTGGTGTAGGGCTTGATCTCCCATCCGGACCTGACGGTTCTGGTTTGATGATGGCTGGAGGCCCATTTTGCTCGTTTGGAAGTCAGCCCATGACGAGAGATCTTCTTGGTCTTGGCTTAGGCGGTGGTGGGGCCTCTGCAAGTAGATTCTCGGCTTTGATTGCTTCCATGGGTGGTGGGTCTGGTTACCCCGTTGCAGCTTCAGACGCCTGCGGCGGAAGTGGCAATGGAAGCCCCTCCGGCGACGCTTGGGATCAAGATGAAAAGCATTGA 1554 52.57 MVDLENSSPVEVSRDAGLSSSGYIEPVAVVAPAKKKRNLPGMPDPAAEVIALSPESLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESARAQTLAVQNSEGKESTTSKAAVTSPPPPPLTPSTTVVSPALSIHSSELADNPIRLPSVSTPAATTCLTSASVNSTTNASANGSSSNNVFGNCTVFAPSASISGTTQISPTLPPPSLPASIVPYDCASTRPSASAVNPTSLSLSTSLYLSSKGSSLFAPSDQDRLQYTWSTQPAAMSATALLQKAAEMGATASNPSLFRGFGMATSSTGQDTSATIQWSRNLNRDHRNGSSLTAGVGLDLPSGPDGSGLMMAGGPFCSFGSQPMTRDLLGLGLGGGGASASRFSALIASMGGGSGYPVAASDACGGSGNGSPSGDAWDQDEKH 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13912614 13915005 - CmoCh01G019570.1 Cmo01g01957 375440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01957 517 Gene3D Classic Zinc Finger 63 105 - -
Cmo01g01957 517 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Cmo01g01957 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Cmo01g01957 517 MobiDBLite consensus disorder prediction 200 231 - -
Cmo01g01957 517 Pfam Zinc-finger of C2H2 type 63 85 - -
Cmo01g01957 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 506 - -
Cmo01g01957 517 SMART c2h2final6 139 159 IPR013087 -
Cmo01g01957 517 SMART c2h2final6 104 134 IPR013087 -
Cmo01g01957 517 SMART c2h2final6 63 85 IPR013087 -
Cmo01g01957 517 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cmo01g01957 517 MobiDBLite consensus disorder prediction 200 216 - -
Cmo01g01957 517 MobiDBLite consensus disorder prediction 492 517 - -
Cmo01g01957 517 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 27 506 - -
Cmo01g01957 517 Gene3D Classic Zinc Finger 118 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01957 Cmo12g00430 CCT
Cmo01g01957 Cmo12g00430 ECH
Cmo01g01957 Cmo09g00165 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01957 Cmo-Chr1:13912614 Cmo03g00793 Cmo-Chr3:6488562 2.51E-138 dispersed
Cmo18g00067 Cmo-Chr18:451754 Cmo01g01957 Cmo-Chr1:13912614 7.88E-71 dispersed
Cmo01g01957 Cmo-Chr1:13912614 Cmo12g00430 Cmo-Chr12:2652002 1.12E-144 wgd
Cmo01g01957 Cmo-Chr1:13912614 Cmo03g00791 Cmo-Chr3:6482721 1.89E-117 wgd
Cmo01g01957 Cmo-Chr1:13912614 Cmo07g00500 Cmo-Chr7:2256698 3.52E-129 wgd
Cmo01g01957 Cmo-Chr1:13912614 Cmo09g00165 Cmo-Chr9:741745 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9157 PF12874 zf-met 0.0037 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01957 K25869 - zju:107420256 548.895