Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01976 ATGGGAGAGCAAACGCAAGTGCAGGTTCAGACTCAAACGCAATCGCAGGCTCAGAACGCGCTTCATGAATCCTCCAACTCTACAACCACTATTGCTCAAGCCACTATAGCACTAAGCGAGGTGATGAATGCGCCATCGCAAACCTCTTCTCTGCCATCCAAAATGCCTTTGCGTCCACGGAAAATTCGAAAGCTCTCGCCCGCTGAATCGGATCCGAATTCCTCTCAGATTGTCACCATTCCGGATGGGCCGAAACCTATCGTCACCGGGAAATCTCACAAGAGCAAGACGGCCCAACAACGCGCCGCCTTCGCGTCTGCTCCAGTGCTGCCAGCCCGATCACTTTCCTGTGAAGGCGAGGTGGAAATCGCGCTTCGGCATCTTGGGAATGCGGATCCGCTCCTTGCACCTTTGATCGACCTCCATCAACGTCCTACCTTCGACAGTTTTCAAACCCCATTCCTTGCCCTAACTAGAAGTATCCTATATCAGCAGCTGGCTTACAAAGCTGGCACATCTATTTACACCCGTTTTATCGCCCTTTGTGGCGGCGACGCTGGTGTTCTTCCCGAAACCGTTCTTGCCTTGAACACTCAACAGCTCAGGCAAATTGGAATTTCGGGTCGTAAATCTAGTTATCTTCATGACCTTGCTAGGAAATACCAAAATGGGATTCTTTCAGACACGGCAATTGTAAATATGGATGATAAATCGCTTTTCACGATGCTCACAATGGTGAATGGAATTGGGTCTTGGTCTGTTCATATGTTCATGATTTTCTCGCTGCACAGACCAGATGTGCTTCCTATCAACGATCTTAATGTTCGCAAAGGTGTTCGGCTTCTCTACAATCTTGAAGAGTTGCCTCGACCATCACAAATGGATCAATTATGCGAGAAGTGGAGGCCGTATCGATCGGTTGGGTCCTGGTATATGTGGAGGCTTGCTGAGGCAAAGGGAGCTTCTTCGAGCGCAGCAGCAGTGGCTGCTGGTGCTAGCTTACAGCTGCAGCAACAAGAGCAGCAGCAGGAGCAACAGCATCAACGGCAGCCGCAGCTTCTTGATCCACTCAATAGCATTCTCAATCTTGGGGCCTGTGCTTGGGGGCAGTGA 1113 50.31 MGEQTQVQVQTQTQSQAQNALHESSNSTTTIAQATIALSEVMNAPSQTSSLPSKMPLRPRKIRKLSPAESDPNSSQIVTIPDGPKPIVTGKSHKSKTAQQRAAFASAPVLPARSLSCEGEVEIALRHLGNADPLLAPLIDLHQRPTFDSFQTPFLALTRSILYQQLAYKAGTSIYTRFIALCGGDAGVLPETVLALNTQQLRQIGISGRKSSYLHDLARKYQNGILSDTAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLNVRKGVRLLYNLEELPRPSQMDQLCEKWRPYRSVGSWYMWRLAEAKGASSSAAAVAAGASLQLQQQEQQQEQQHQRQPQLLDPLNSILNLGACAWGQ 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14002842 14006051 + CmoCh01G019760.1 Cmo01g01976 375459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01976 370 Pfam HhH-GPD superfamily base excision DNA repair protein 159 302 IPR003265 GO:0006284
Cmo01g01976 370 CDD ENDO3c 154 315 IPR003265 GO:0006284
Cmo01g01976 370 Gene3D - 126 314 - -
Cmo01g01976 370 SUPERFAMILY DNA-glycosylase 149 315 IPR011257 GO:0003824|GO:0006281
Cmo01g01976 370 MobiDBLite consensus disorder prediction 1 28 - -
Cmo01g01976 370 PANTHER BNAC05G15000D PROTEIN 8 365 - -
Cmo01g01976 370 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 8 365 - -
Cmo01g01976 370 MobiDBLite consensus disorder prediction 43 86 - -
Cmo01g01976 370 Gene3D Hypothetical protein; domain 2 151 264 - -
Cmo01g01976 370 SMART endo3end 162 317 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01976 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] - csv:101202943 588.186
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01976 Cmo09g00152 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01976 Cmo-Chr1:14002842 Cmo03g00774 Cmo-Chr3:6410450 3.67E-94 wgd
Cmo01g01976 Cmo-Chr1:14002842 Cmo09g00152 Cmo-Chr9:682059 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g952 . Blo12g00907 . Bda03g00261 Bpe02g00389 Bpe04g00215 Bma04g00210 Bma01g02322 . . Cma01g01914 Cma09g00154 Car01g01495 . . Cpe06g00109 . . . . . . . . . . . . . . . Cone4ag1913 Cone7ag1826 . . Lsi04g01669 Csa03g04214 Chy04g00505 . . . . . . . . . . Cmo01g01976 Cmo09g00152 . . . Car09g00136 . Cpe02g00123 . . . . . . . Cla05g01936 Cam05g2079 Cec05g2092 Cco05g2143 Clacu05g2075 Cmu05g1950 Cre05g2071 . . . Cme04g00561
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005031 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01976 Cmo_Chr01 FPKM 11.941482 11.302564 11.544274 10.76218 12.178897 12.689153 12.310519 16.44096 17.040447 17.183121