Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01979 ATGGCGTCTTTGTGTAGTGAGGCGAATACTGCTATGACGACGCCTCTGAGAGGCATAATTAGCGAGCAGAGTGAAATAAGAGAAGGCAGTGGGAATTCGTCGAGAAAAGTGAGGGAGGGAGTTCAAGTGCGTCATCTCGGGAAGTCGCATATTGTCCCTGAGCAGCCTTCGTCATCTTCTCCGGTTCCGATCGAACAGAGCCGGTGGGCGAATTTGCCGCCCGAGCTTCTATTGGACATAATTCAACGAGTGGAAGCGAGTGAGACTACTTGGCCTTCTCGCCGGCATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAATTGTGAGGACTCCCGATCAGTGTGGGTGGATCACCTTCCCAATTTCCCTGATGCAGCCGGGACCAAGAGAAACGCCAATCCAGTGCTTCATTAAAAGAGAAAGGGCAACTTCAACGTTTCGTCTCTATCTCGGCCTAAGCCCTGACGACTTCTCTCGAGCAAGCAACAATTTCATTGGAAAATTGAGGTCAAATTTTCTGGGGACCAAGTTTTCGATTTATGACAGTCAGCCTCCACACGACCCGAAATTGCGAACTAGTAGATCAAAACGAAGAATTCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAACCAACTATAAAGTCGCTGCCGTAAGCTACGAGCTGAATGTCCTCCGCACCAGAGGGCCGAGGAGAATGAGGTGCACAATGCATTCGATACCTGTTGCAGCTGTGGAGGAGGGCGGCACTGCCCCAACTCCAACAGAGTTTAAAGACTGCATCGATGACCATGATTCATCTACGTCGAGTTGCAAAGGAAAGAAGCCAATATGGGAGTCGTCCCCCGAGCCTCTTGAATCGACAGCACCGTTGGTATTGAAGAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTGAATTTCAAAGGGCGTGTCACGGTTGCATCTGTGAAGAATTTCCAGCTGGTTGCTGCAGCAGAGACGAGTGAGAATGTGTCTGCAGCTGAACAAGAAAAAGTGATTCTGCAGTTTGGGAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTACCCTCTCTCAGCTTTCCAAGCGTTTGCAATCTGCCTTAGTAGCTTTGATACCAAGCCAGCTTGTGAATGA 1173 48.93 MASLCSEANTAMTTPLRGIISEQSEIREGSGNSSRKVREGVQVRHLGKSHIVPEQPSSSSPVPIEQSRWANLPPELLLDIIQRVEASETTWPSRRHVVACASVCRSWRMITKEIVRTPDQCGWITFPISLMQPGPRETPIQCFIKRERATSTFRLYLGLSPDDFSRASNNFIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYKVAAVSYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCIDDHDSSTSSCKGKKPIWESSPEPLESTAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSENVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14009925 14012946 - CmoCh01G019790.1 Cmo01g01979 375462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01979 390 Pfam Tub family 160 385 IPR000007 -
Cmo01g01979 390 SUPERFAMILY Tubby C-terminal domain-like 118 390 IPR025659 -
Cmo01g01979 390 PANTHER TUBBY-RELATED 15 161 - -
Cmo01g01979 390 PANTHER TUBBY-RELATED 161 390 - -
Cmo01g01979 390 Gene3D - 64 118 - -
Cmo01g01979 390 MobiDBLite consensus disorder prediction 267 286 - -
Cmo01g01979 390 Pfam F-box domain 69 116 IPR001810 GO:0005515
Cmo01g01979 390 PRINTS Tubby superfamily signature 318 334 IPR000007 -
Cmo01g01979 390 PRINTS Tubby superfamily signature 300 317 IPR000007 -
Cmo01g01979 390 PRINTS Tubby superfamily signature 219 246 IPR000007 -
Cmo01g01979 390 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Cmo01g01979 390 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Cmo01g01979 390 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Cmo01g01979 390 PRINTS Tubby superfamily signature 155 171 IPR000007 -
Cmo01g01979 390 Gene3D Tubby Protein; Chain A 127 390 IPR025659 -
Cmo01g01979 390 PANTHER TUBBY-LIKE F-BOX PROTEIN 161 390 - -
Cmo01g01979 390 SUPERFAMILY F-box domain 65 127 IPR036047 GO:0005515
Cmo01g01979 390 MobiDBLite consensus disorder prediction 16 65 - -
Cmo01g01979 390 PANTHER TUBBY-LIKE F-BOX PROTEIN 15 161 - -
Cmo01g01979 390 MobiDBLite consensus disorder prediction 29 45 - -
Cmo01g01979 390 ProSitePatterns Tub family signature 2. 375 390 IPR018066 -
Cmo01g01979 390 ProSitePatterns Tub family signature 1. 318 331 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01979 Cmo09g00146 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01979 Cmo-Chr1:14009925 Cmo04g00803 Cmo-Chr4:4013710 6.07E-173 dispersed
Cmo01g01979 Cmo-Chr1:14009925 Cmo07g00480 Cmo-Chr7:2191845 8.10E-152 wgd
Cmo01g01979 Cmo-Chr1:14009925 Cmo09g00146 Cmo-Chr9:656942 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9159 PF01167 Tub 8.80E-86 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01979 K19600 - csv:101222500 670.618