Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01981 ATGGAGTATCGAACTTCGTCGACTGTCTACAAGAAATATTCAAATGCTCGCAGTTTCAACGATAGATCGACGTACGATGGCGTTTTTGCTGCTCCGTCGAAGCACGGGGCTCCGGTCTTCTCGGCTCGAGTCGAGGACTACAGAGAGATTTTTGGCGGTTCGCGAGTTTCCTCGATTCCGATTCTTGATGTTCCGGCAGTGAGCGACAAGAAGTTTCCGGTAGATGTTCGTAGCTCGAAGGTTGAATACTCGAAGATTTTTGGCGGTTTCGATGAGTTAAATTTCGCCGTGCCTTACGAGGAACTTCTGGCCGAAGCAAACAAAGCAAATTCGTTTTCTAAGGAAACTCGGACTTCAGCTGGAAGAGGATCCGCAGCAACAGAAAATTCTTCTCAGTATGAAAAGGAGCATAATTTTTCCACGCGTGAAGCATCATCTCTTCCATTTGATAGAATGGAGAAGTTCAGCGTGTCATATCAAAAGATCAACCAAGGAAGCAAAAGTTATGCGACAGAGACAGCTCATGTAGCTCTTCCCCAGGCCATTCCAGGTTTTTCACGTTTAATTGATGAACAATCTCCTGTGCAGATGTGTGTAACTGATATGCCAACATCAACATCTGAAAAATTGAAGGATATTCACCCAGAAAAAGTTGGGAATGAAGTGGAAAATAAGCCAGAACTTCCAATTTCTGGTGACAGTGAACAGACGTTTAGATCAACTAATCCTACTAATCGTCAAAACAGAACTGGCTGGTTTAGATCAGATTCAGCTGATAAGTTATTCAATGGATATGAGGTGGATCAAGGGGTACACAAACCTGAAACTCCCCTGAAACATAATTTTCTGCCTAAATTTGGTAGAAGTGATGGATTTTCAGGCAAAACAACTGGTTTAAATTCTGAAACTTTTGAACACTCTAAAGATTCTTATGACGTTTCTTCACCTCCATATTTTGGGGAGGAAGTTGAGGTGAATCCAGTTGCTGCTGCCTCAGTTGCAGCTTTGAGGAAAGCAATTGATGCTGCTCAGGAAAGTATAAAAGTTGCCAAGGAGTCGATGGAAAGAAAGAAAGCTGCCAGACTTCAAAAGCATAAAAAAACAAGATCTTCTAGGATCCTAAATCCTGAAGAGAGAAAGGAGGTAAGCACACGCCAAGAGAAGGTGGCTGGTAAAACCAATGGAAAAATGGATCCTTCAGAGGAAGAAATTGTTGATAGCAGGGAGGATAAATCATCTGCAGAATGTCATATCACTCAAAGAGCGGTGAGGGAAAATTTAAATGCCATAGAACCAAATTATGTGGAATTGAAGTCAACAAAAGTTGATTGTAGGGAGGAAGAAGCAAAAGAATTAGATGCAACAGAACAATTTTATGAACCTAGGCATTTTGATAAAGATGAGGCAAAAAGACTGGAACCTCGAAAGGAGGACAATGCAAATAGATATGGATGGCAAGGAAATATTGGATTAAAGGAAACATCTGAGAATCCTGGAGAATATGGTGATAACTTGGTAATAGTCGATAAGACTAAGGAGCCTGAGGAAAATGGCATAAACTTAAGTGTAGTCAAGGGCATTCTTATGAGCAAATTAAAATCAGTTCTAGGTGTTATTGGGAAGGAAGAAGATAAAATAACACGTCGCCAAGACCAGGTAGAAACTGAAATGAAAGCTGAGGCATCCGTAGAACATGAAAAGTGTGTGGAATTGCCGGAAGAACTTCAAATAACAGAAGATCACGAGGAGTTTTCAATCAGGGAGATGGGGGTAAATAAGGACAGGGAGACCCAAGTTAAGGCTCATCAATGGGTAGTGGAGAAAGATAGACATATCTGCCAACAAGAAGAAAAAGAGGGAGAAACAAATGCCTTCCAAATTGAAAATGATGTTGAAAAGATATTCGATAAATCTAACGAAGAGGAAGGATTTATAAATTGTAACAATGTCTTCCATGATGGCGAAGAAGCTCAAGACATGCTAGAAGATGTTGAATCAAAAGGAAAGGAAGAACTTCAAGAAAACAAACGGGATGATGAGATGATTGAAGGGCTTCCTTTTCATTTGCGCAATAATGAGATTGGACATCATGTTCAAAGACAAATAAACATTGGTGAATGTGCAGTACACGAGAACATCGTCGTACAAGCAACGCCAGACAATCTGAATACTGAGAATAAAATTGAACTAGAAGACGGTTTAAGTAAGCAGGATGAATGTGATAACCTCTCAGAAGATCAGGATGCTAATAATTTCATAGCTAGTATGGAAGGGGTAGAAGTGATTACCGACCAGCCTGAATATCGGAATATTGATAATTCAATGGAGTTAGCTAATATTGCCTTGGAAGTTATGAATAATGAACCTGAGGCAATTACTGAGGAGGGTGACGTGGAGGATAGATTGCCTTTTAAATTGTTTTCTATGGCAGAGGATGCACTTAAACGTAGATTCAAAATGGAAAATTCAAATGCAAGCCCCATTTCAATCCAAAGTGGGTTAGATTTTGGTCTAATCGATTTGAAATTAGAGCAAATGCAACATGATGCATCTGTGAACTGGTCCTCAATCTTTTGCAGTTTGGAAAATGCTGAAGGTATGGCTTCTGAACTTGGAGGAATTGAGAGAAATATGGAGAAAATTGAAGTTTCAATTATTGAAGAAAATGATGACGATTCAAATGAAGAAGAGATACCTAGTAATGTAAATAATACTGAAGCAGGTAACCAGCCTAGTATAACTATAGATGGCAACAAAATCAGTGAAGAGGTAGTGGAGGAAAACGCAAATACAGGAGCAACTGAGAACCATCAAGCAACCATCGAAGTAGAAGAAAGTGAAACTTTTTATGTTTTGAAAAATGAAATGCAGTTGGAATTTGATGAGAACAATATTAGAACCAGTAGTCTATCTGGTATGATTGACATGGACTCGGAAACAGTTCATGACATCAAAACAAGTGAAACTCGAGGAGAAAGCGAGGATAGTTATCGAGTAATTATGACAGAGGATGAAATGGAAGCTAGTGACTCGTCTGACAAAGAGGTGGAATATGCAGTTCACTTGGAAACTTCGGAAGAAGCTGATTCGCCTGGAAGTTCAGGAAGAAAAGAAAATTTAGAAAATACAGAACAGGAGATTAGTACTGGCCAGAAGGTAACAGAAAACGAGAATCATCGAACAACCCCAACATTGGGTGAAATAGAAATTAATGCTGACATGCAGAGAGAAGCAGGGATTGAAACCAAATTCGACAATGAGACAGAAGCTCATGGTTTGCCTCAACCTAAAGAGGAGCTGGCTGAGAACTCAACAGATCAAAGTATCTTAGAAAATGATGGGGAGAATCATCAAGCGCCCCAATTAATGCAGGAGGAGAAGGTATTCCATGAGAAATTTGAGAAAGATGCTGAAGTGATAAAGGATCGGCTGAGAAAAATTGATGAAGCAAAAGGAAAGGAAAGAGAGAGGGAGAGATTAGCCGTAGAAAGAGCAATTCGCGAGGCTCGTGAAAGAGCATTTGCAGAAGCCCGAGAGAGGGCTGCTGCCGAGAGAGCTTCTGCTGACACTCGTCGAAGAGTAATGGCCGAGCCACGTGAACGCCCAAGGAAGGCTTCCATTGAGGCAAATACTAAGCCTTCTACCGAAAAGCATTCAAAGGAAGCCAAATTAAAAGCTCAGCGTGCTGCCGTTGAAATGGCTACTGCTGAGGCAAGAGAGCGTGCTTTAGAAAAAGCTATGTCCGAAAAGGCTATTTCCGAGGCAAGAAATCTGGCTGACAAGATTGTTGCCGAAAAACTAAATGGTGCAGCTGGAGTTAGTAAAGTAAAGAAGAGCTTTTCATTTAATGACTCTCAGCCAAAAGGCCAATGTTCTTCCAGCAATTTCAGGCATGCGAATTCATTCAACCTTGGAGGTCCCGACGCGTCAGAGAGAGAGGTGGGATCTGCTGGGGAATCTGCACAGAGAAGTAAAGCCAGGTTGGAGAGGCATCAGCGAACGGTTGAGCGTGTGGCGAATGCTCTTGCAGAGAAGAATATTCGTGACATTCTCGGACAGAGAGAACAGGAAGAGAGAAATAGACTAGCAGAAGGTCTAGATGCTGAAGTTAAACGGTGGTCAAGTGGGAAGGAGGGAAATCTGCGTGCATTGCTTTCAACTCTACAATATATCCTCGGGCCCGACAGTGGGTGGCAGCCAGTCCCTCTAACAGATATTATCACGACAGCTGCTGTCAAGAAAGCTTACCGTAGGGCAACTCTTTCGGTCCACCCTGACAAATTGCAGCAACGGGGTGCAAGCATTCCACAAAAGTACCTATGCGAGAAGGTTTTTGATCTTTTGAAGGCTGCTTGGAACAAGTTCAACATGGAGGAACGATTATAA 4386 41.52 MEYRTSSTVYKKYSNARSFNDRSTYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIPILDVPAVSDKKFPVDVRSSKVEYSKIFGGFDELNFAVPYEELLAEANKANSFSKETRTSAGRGSAATENSSQYEKEHNFSTREASSLPFDRMEKFSVSYQKINQGSKSYATETAHVALPQAIPGFSRLIDEQSPVQMCVTDMPTSTSEKLKDIHPEKVGNEVENKPELPISGDSEQTFRSTNPTNRQNRTGWFRSDSADKLFNGYEVDQGVHKPETPLKHNFLPKFGRSDGFSGKTTGLNSETFEHSKDSYDVSSPPYFGEEVEVNPVAAASVAALRKAIDAAQESIKVAKESMERKKAARLQKHKKTRSSRILNPEERKEVSTRQEKVAGKTNGKMDPSEEEIVDSREDKSSAECHITQRAVRENLNAIEPNYVELKSTKVDCREEEAKELDATEQFYEPRHFDKDEAKRLEPRKEDNANRYGWQGNIGLKETSENPGEYGDNLVIVDKTKEPEENGINLSVVKGILMSKLKSVLGVIGKEEDKITRRQDQVETEMKAEASVEHEKCVELPEELQITEDHEEFSIREMGVNKDRETQVKAHQWVVEKDRHICQQEEKEGETNAFQIENDVEKIFDKSNEEEGFINCNNVFHDGEEAQDMLEDVESKGKEELQENKRDDEMIEGLPFHLRNNEIGHHVQRQINIGECAVHENIVVQATPDNLNTENKIELEDGLSKQDECDNLSEDQDANNFIASMEGVEVITDQPEYRNIDNSMELANIALEVMNNEPEAITEEGDVEDRLPFKLFSMAEDALKRRFKMENSNASPISIQSGLDFGLIDLKLEQMQHDASVNWSSIFCSLENAEGMASELGGIERNMEKIEVSIIEENDDDSNEEEIPSNVNNTEAGNQPSITIDGNKISEEVVEENANTGATENHQATIEVEESETFYVLKNEMQLEFDENNIRTSSLSGMIDMDSETVHDIKTSETRGESEDSYRVIMTEDEMEASDSSDKEVEYAVHLETSEEADSPGSSGRKENLENTEQEISTGQKVTENENHRTTPTLGEIEINADMQREAGIETKFDNETEAHGLPQPKEELAENSTDQSILENDGENHQAPQLMQEEKVFHEKFEKDAEVIKDRLRKIDEAKGKERERERLAVERAIREARERAFAEARERAAAERASADTRRRVMAEPRERPRKASIEANTKPSTEKHSKEAKLKAQRAAVEMATAEARERALEKAMSEKAISEARNLADKIVAEKLNGAAGVSKVKKSFSFNDSQPKGQCSSSNFRHANSFNLGGPDASEREVGSAGESAQRSKARLERHQRTVERVANALAEKNIRDILGQREQEERNRLAEGLDAEVKRWSSGKEGNLRALLSTLQYILGPDSGWQPVPLTDIITTAAVKKAYRRATLSVHPDKLQQRGASIPQKYLCEKVFDLLKAAWNKFNMEERL 1461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14021448 14027622 + CmoCh01G019810.1 Cmo01g01981 375464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 889 913 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 230 251 - -
Cmo01g01981 1461 SUPERFAMILY Chaperone J-domain 1322 1456 IPR036869 -
Cmo01g01981 1461 Coils Coil 1321 1360 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 1023 1120 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 1181 1227 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 370 414 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 1281 1330 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 1074 1096 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 1100 1119 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 1281 1301 - -
Cmo01g01981 1461 Coils Coil 1219 1246 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 1181 1233 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 898 913 - -
Cmo01g01981 1461 Coils Coil 333 360 - -
Cmo01g01981 1461 Coils Coil 1130 1150 - -
Cmo01g01981 1461 PANTHER AUXILIN-LIKE PROTEIN 1 979 1460 - -
Cmo01g01981 1461 PANTHER AUXILIN-LIKE PROTEIN 1 1 948 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 223 251 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 351 414 - -
Cmo01g01981 1461 Gene3D DnaJ domain 1333 1460 IPR036869 -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 1023 1043 - -
Cmo01g01981 1461 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 948 - -
Cmo01g01981 1461 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 979 1460 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 110 144 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 110 134 - -
Cmo01g01981 1461 MobiDBLite consensus disorder prediction 1044 1065 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01981 - - - bhj:120085690 1935.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01981 Cmo-Chr1:14021448 Cmo07g01311 Cmo-Chr7:7341703 9.01E-53 dispersed
Cmo01g01981 Cmo-Chr1:14021448 Cmo03g00766 Cmo-Chr3:6370723 4.31E-21 wgd
Cmo01g01981 Cmo-Chr1:14021448 Cmo07g00477 Cmo-Chr7:2171990 1.20E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g969 Blo01g01570 . . . . . . Bma01g02328 . . Cma01g01918 . Car01g01499 . . . . . . . . . . . . . . . . . . Cone4ag1922 Cone7ag1834 . . Lsi04g01688 Csa03g04228 Chy04g00487 . . . . . . . . . . Cmo01g01981 . . . . . . Cpe02g00118 . . . . . . . Cla05g01924 Cam05g2061 Cec05g2074 Cco05g2125 Clacu05g2055 Cmu05g1932 Cre05g2055 . . . Cme04g00546
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008012 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01981 Cmo_Chr01 FPKM 27.352129 30.025074 9.185721 9.739338 16.33077 14.502938 15.922324 0.813258 0.620189 0.635782