Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01996 ATGAGCTTATCAATGGCGTCTCGAGCACTGAATCAGAGCCTAAATCGTAGTTATGGTGTAGGGTTAATAAGAAAGAAGGTACAAGAAGATGGGGACAGCCTTGAGAGCGTGTTTAAGCTGCGAAATGGAAGGGAGAATCATTTAGGATACCAAGATTCTTACGCCCCATATTTCGATGATTTTCTTTCATCTATGCTTCTTCTTCCGACTGCCCTACATGATTTAGGACATTGGTGTTCTCCGGAAGGAATTAGAGTCCGTCTGGATGCATCGAAAACAGTACAGAAGCTGACGCTTGCTGTTCCTATACCAGTAGTTTCTTTGATGAAAAATGGAAACGAGTTTCTACTTGCCGACACTGTTGGTTTCATCCAAAAGTTACCAACTATGCTGGTTGCTGCATTCAGAGCAACATTAGAGGAGATATCAGAATTATTATTGCTGGTTCAACTGGTGGACCTCGGCCATCCGCTGGCTGATCAACAGATAGAGGCTGTGGATAAAGTTCTTTTAGAATGGGATGTGTCGTCGATTCCGAGGTTGATGGACTCAGTGGTTTGGGTAGAAGCCTTGATTCAGTTTGACAGAGGCGAGTTCTTGAGCACTGTGTATCAGGTTGGAGTGGTAGAGAAAACTGTAAGTACATATCTTTTGGGTCACGCATCATTATCAGGTGTCGTTGTCCTGAAGTCACCAGTAAAAAAATGGATTGGGTCGGCGATCTACCCTATGCAGGGCCAGAATCTGAGCCATAATTAG 759 44.01 MSLSMASRALNQSLNRSYGVGLIRKKVQEDGDSLESVFKLRNGRENHLGYQDSYAPYFDDFLSSMLLLPTALHDLGHWCSPEGIRVRLDASKTVQKLTLAVPIPVVSLMKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLMDSVVWVEALIQFDRGEFLSTVYQVGVVEKTVSTYLLGHASLSGVVVLKSPVKKWIGSAIYPMQGQNLSHN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14097423 14102054 - CmoCh01G019960.1 Cmo01g01996 375479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01996 252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 190 IPR027417 -
Cmo01g01996 252 PANTHER GTP-BINDING PROTEIN 6-RELATED 109 182 - -
Cmo01g01996 252 Gene3D - 87 186 IPR027417 -
Cmo01g01996 252 PANTHER GTP-BINDING PROTEIN HFLX 109 182 IPR016496 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01996 K03665 hflX; GTPase - csv:101219907 135.576
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01996 Cmo09g00129 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01996 Cmo-Chr1:14097423 Cmo18g01387 Cmo-Chr18:12883218 7.42E-06 dispersed
Cmo01g01996 Cmo-Chr1:14097423 Cmo09g00129 Cmo-Chr9:593893 8.59E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1004 . . . Bda03g00271 . Bpe04g00226 Bma04g00221 . . . . Cma09g00132 . . . Cpe06g00092 . . . . . . . . . . . . . . . . . Cone17ag1363 Cone20ag0118 Lsi04g01703 Csa03g04243 Chy04g00472 . . . . . . . . . . Cmo01g01996 Cmo09g00129 . . . Car09g00118 . . . . . . . . . Cla05g01909 Cam05g2046 Cec05g2055 Cco05g2110 Clacu05g2039 Cmu05g1918 Cre05g2040 . . . Cme04g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004568 1 2 1 1 1 2 1 2 2 1 1 1 1 0 1 3 2 2 1 3 1 1 1 1 1 1 1 1 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01996 Cmo_Chr01 FPKM 48.251354 48.801788 49.09473 53.94875 68.619156 71.681648 68.670082 62.103222 61.89983 64.33709