Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02000 ATGTGCTTTAGGTGCCATTTTTGCTGCGTGCTCTTTTTTACTCTTTATCTTCTTTCATTTTTCAAAGCTTACAATTGTGATGAGATATTGGCTCGCATTGTTGTGTCTCATAGTCACAGTCGGGTTTTGACAAGGAGGAACATGGGAAGAACTCTGCTTTGTTGTGTTTTGCGATGCCATCAAATGGCAGCTTCGTTTATCAGTTTAAGAAAAGCCTTCTGCATCATCAAAGGAGTCGATCGAGTTCTCATTTATTGGACTGTCAAATTTACCATTATTTGCGTTATTCTATGTCTTTCATATGTCTCACCTTCAACAATAACAACAATGGAAACAAAGCCCAGAAAACCCACCACCAACGTCGCTCAAGCCAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGACCCGACAACGCCTCATGCACATTCAAAGGCGTCCGCCAGCGGACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAATCGCGGCGCTCGTCTCTGGCTCGGCACGTTCGACACCGCCCATGAAGCTGCCGTGGCTTACGATGCTGCCGCTCGTAAGCTCTACGGGTCTGATGCTAAGCTCAACCTCCCTCAAACTGCGTCAGAGCCTCAACAGTCTGCGCCCACCGCTGCAATGCCGTCGCCCTCTCCACCGGTGGCGGAGATGGACCCAATCGGAGGGCTGTGGGGAAGTGAGGATGTGAATTTTGATGAGTCGATATGGAGAGAGGCGGTGATGTCTTTGGATTTTCCTATGATTGGTGATGATGAAGGGTTTTATTTCGATGGGGTGGGAGGCCGGGACGCTATGCAGTGGTGCATGTGA 834 50.12 MCFRCHFCCVLFFTLYLLSFFKAYNCDEILARIVVSHSHSRVLTRRNMGRTLLCCVLRCHQMAASFISLRKAFCIIKGVDRVLIYWTVKFTIICVILCLSYVSPSTITTMETKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMDPIGGLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14118065 14120661 + CmoCh01G020000.1 Cmo01g02000 375483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02000 277 SMART rav1_2 143 206 IPR001471 GO:0003700|GO:0006355
Cmo01g02000 277 Gene3D AP2/ERF domain 143 201 IPR036955 GO:0003700|GO:0006355
Cmo01g02000 277 MobiDBLite consensus disorder prediction 201 228 - -
Cmo01g02000 277 ProSiteProfiles AP2/ERF domain profile. 143 200 IPR001471 GO:0003700|GO:0006355
Cmo01g02000 277 Pfam AP2 domain 143 192 IPR001471 GO:0003700|GO:0006355
Cmo01g02000 277 MobiDBLite consensus disorder prediction 112 126 - -
Cmo01g02000 277 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Cmo01g02000 277 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700|GO:0006355
Cmo01g02000 277 MobiDBLite consensus disorder prediction 112 137 - -
Cmo01g02000 277 SUPERFAMILY DNA-binding domain 143 201 IPR016177 GO:0003677
Cmo01g02000 277 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 120 218 - -
Cmo01g02000 277 CDD AP2 142 202 IPR001471 GO:0003700|GO:0006355
Cmo01g02000 277 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 120 218 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02000 Cmo05g00279 CCT
Cmo01g02000 Cmo12g00388 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02000 Cmo-Chr1:14118065 Cmo03g00335 Cmo-Chr3:4461152 7.62E-33 dispersed
Cmo01g02000 Cmo-Chr1:14118065 Cmo12g00388 Cmo-Chr12:2407396 1.43E-65 wgd
Cmo01g02000 Cmo-Chr1:14118065 Cmo05g00279 Cmo-Chr5:1199948 8.71E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9160 PF00847 AP2 5.30E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02000 - - csv:101204876 236.113