Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02001 ATGACGGGGTTGTTATATTTAGGTGGTAAACAAGAGGATGATCAAGAACAAAGAGGAAGAGAGCAGCAATTGTTTTTGTACAATAATAGAAACAACGAGGAGATCTACTCCAAGGGGTTGGAGATATGGCCACAATATGGGCAGCAGCATCAAGCGGTGGAGAATTACATTTCCTTTGGAGTGGGGCCGAGTAGGATGAACTTGATGATCAACGCCTCTGATCATGAGTTTACCATGATGAGACAAGGAGCTGCTACTGGCGGCGGTGGAGGTGGGATTAATTGCCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTACCCATTTGAGATGTCGGACTTGTTGTAAGAGCCGAGGGTTTCACTGTCAAACCCATGTTAAGAGTACTTGGGTTCCGGCTGCCAAGCGTCGAGAACGACAACAACAACGACAACAACAACAATTTCGACCAGATCAATTCGATCAAACCACTCCCAAACGCCATCGAGAAACTCAACCTTCTATTCCCCCTGCCGCGGTCACCTCAGGGTTAGAACTTGCACATTTTCCAGCTGAATTCAACTCCCCAGCTGTTTTCCGCTGTGTCAAAGTCAGTGCCATTGACAATGTAGAAGAGCAATTAGCATATCAAACAGCTGTGAACATTGGTGGCCATATGTTCAAAGGCATTCTCTACGACCACGGTCCTGAATCCAGCCAGAATTTAAGCACCGGTGGTGAGAGTTCATATAGTCACGGCGGGGATGACGACGGGCAAGGCTTGGATCTGGTGATCGGAGCGTCCAACAGCTTCGGGAGAGTTAACCCATCGGCGTCATTCGTGGAGTCTTCACTATATCCTATCCCGATCAACACGTTCACCCCCGGTATGCAAAATTTCCCTTCCTCAAGAACATAA 897 47.38 MTGLLYLGGKQEDDQEQRGREQQLFLYNNRNNEEIYSKGLEIWPQYGQQHQAVENYISFGVGPSRMNLMINASDHEFTMMRQGAATGGGGGGINCQDCGNQAKKDCTHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRQQQQFRPDQFDQTTPKRHRETQPSIPPAAVTSGLELAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDHGPESSQNLSTGGESSYSHGGDDDGQGLDLVIGASNSFGRVNPSASFVESSLYPIPINTFTPGMQNFPSSRT 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14124980 14126382 - CmoCh01G020010.1 Cmo01g02001 375484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02001 298 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 94 136 IPR006510 -
Cmo01g02001 298 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 294 IPR007818 GO:0003700|GO:0006355
Cmo01g02001 298 MobiDBLite consensus disorder prediction 134 170 - -
Cmo01g02001 298 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 181 229 IPR006511 -
Cmo01g02001 298 Pfam Domain of unknown function (DUF702) 92 230 - -
Cmo01g02001 298 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 294 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02001 Cmo05g00287 CCT
Cmo01g02001 Cmo12g00381 CCT
Cmo01g02001 Cmo05g00287 ECH
Cmo01g02001 Cmo12g00381 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02001 Cmo-Chr1:14124980 Cmo16g00699 Cmo-Chr16:3464046 4.32E-58 dispersed
Cmo19g00311 Cmo-Chr19:2339193 Cmo01g02001 Cmo-Chr1:14124980 6.93E-120 transposed
Cmo01g02001 Cmo-Chr1:14124980 Cmo12g00381 Cmo-Chr12:2364323 2.25E-71 wgd
Cmo01g02001 Cmo-Chr1:14124980 Cmo03g00734 Cmo-Chr3:6254612 2.95E-65 wgd
Cmo01g02001 Cmo-Chr1:14124980 Cmo05g00287 Cmo-Chr5:1245268 6.01E-90 wgd
Cmo01g02001 Cmo-Chr1:14124980 Cmo07g00450 Cmo-Chr7:2060308 7.54E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9161 PF05142 DUF702 7.70E-62 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02001 - - csv:101220654 385.956