Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g02003 | ATGGCGCGAGGGAAGATCCAGATCAAGCGAATCGAGAATCCTACCAACAGGCAGGTCACCTACTCGAAGCGACGCAACGGCCTCTTCAAAAAGGCCAACGAGCTCACCGTGCTCTGCGATGCCAGAGTCTCCATTATCATGTTCTCGAGTACCGGAAAACTCCATGAGTATATCAGCCCTTCCACCTCGACCAAGGAGCTTTTCGATCACTACCAGAAGACTTTAGGCGTCGATCTATGGATCTCTCACTTCCAGAGAATGCAAGAGAATCTGAAGAAGCTCAAAGATGTGAATCGAAATCTCCGCAGACAAATTAGGCAGAGGATGGGGGAATATATGAATGATCTGAGCTTTGAAGAGCTGCGTTGTTTAGAGCAGGATATGGATAATGCTGTGAGGATCATTAGGGAACGCAAGTACCGGGTGATATCAAACCAGATTGAAACGCACAAGAAGAAGTTGAAGAGTGTTGGAGAAATTCACAAGACTCTTCTCCAGGAGTTTGACATTGCAACAGGGGAAGAACCACACTATGGGTTGGTAGACGATGAAGGAGTAGGAGGGGACTACGATTCAATGATGAGATACTCAGGCGGCGGAGGCCCTCGCATTTTTGCACTACGGCTCCACCCCAACCATCCTAATATGCACCACGCCCACCCTTCGGATCTCACTACTTATCCGCTGCTTGAGTAG | 696 | 48.71 | MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSSTGKLHEYISPSTSTKELFDHYQKTLGVDLWISHFQRMQENLKKLKDVNRNLRRQIRQRMGEYMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKTLLQEFDIATGEEPHYGLVDDEGVGGDYDSMMRYSGGGGPRIFALRLHPNHPNMHHAHPSDLTTYPLLE | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14129143 | 14130804 | + | CmoCh01G020030.1 | Cmo01g02003 | 375486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g02003 | 231 | ProSiteProfiles | K-box domain profile. | 84 | 174 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo01g02003 | 231 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g02003 | 231 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g02003 | 231 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g02003 | 231 | Coils | Coil | 84 | 111 | - | - | |
Cmo01g02003 | 231 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g02003 | 231 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 228 | - | - | |
Cmo01g02003 | 231 | Gene3D | - | 13 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo01g02003 | 231 | SUPERFAMILY | SRF-like | 3 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo01g02003 | 231 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977|GO:0045944 | |
Cmo01g02003 | 231 | Pfam | K-box region | 83 | 168 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo01g02003 | 231 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g02003 | 231 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g02003 | 231 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g02003 | 231 | PANTHER | APETALA3 | 1 | 228 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g02003 | Cmo09g00122 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01418 | Cmo-Chr1:11128669 | Cmo01g02003 | Cmo-Chr1:14129143 | 1.81E-43 | dispersed | |
Cmo01g02003 | Cmo-Chr1:14129143 | Cmo09g00760 | Cmo-Chr9:3841900 | 1.10E-44 | dispersed | |
Cmo01g02003 | Cmo-Chr1:14129143 | Cmo09g00122 | Cmo-Chr9:563424 | 6.64E-147 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9162 | PF01486 | K-box | 3.00E-21 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g02003 | K09264 | - | csv:101218008 | 394.815 |