Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02003 ATGGCGCGAGGGAAGATCCAGATCAAGCGAATCGAGAATCCTACCAACAGGCAGGTCACCTACTCGAAGCGACGCAACGGCCTCTTCAAAAAGGCCAACGAGCTCACCGTGCTCTGCGATGCCAGAGTCTCCATTATCATGTTCTCGAGTACCGGAAAACTCCATGAGTATATCAGCCCTTCCACCTCGACCAAGGAGCTTTTCGATCACTACCAGAAGACTTTAGGCGTCGATCTATGGATCTCTCACTTCCAGAGAATGCAAGAGAATCTGAAGAAGCTCAAAGATGTGAATCGAAATCTCCGCAGACAAATTAGGCAGAGGATGGGGGAATATATGAATGATCTGAGCTTTGAAGAGCTGCGTTGTTTAGAGCAGGATATGGATAATGCTGTGAGGATCATTAGGGAACGCAAGTACCGGGTGATATCAAACCAGATTGAAACGCACAAGAAGAAGTTGAAGAGTGTTGGAGAAATTCACAAGACTCTTCTCCAGGAGTTTGACATTGCAACAGGGGAAGAACCACACTATGGGTTGGTAGACGATGAAGGAGTAGGAGGGGACTACGATTCAATGATGAGATACTCAGGCGGCGGAGGCCCTCGCATTTTTGCACTACGGCTCCACCCCAACCATCCTAATATGCACCACGCCCACCCTTCGGATCTCACTACTTATCCGCTGCTTGAGTAG 696 48.71 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSSTGKLHEYISPSTSTKELFDHYQKTLGVDLWISHFQRMQENLKKLKDVNRNLRRQIRQRMGEYMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKTLLQEFDIATGEEPHYGLVDDEGVGGDYDSMMRYSGGGGPRIFALRLHPNHPNMHHAHPSDLTTYPLLE 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14129143 14130804 + CmoCh01G020030.1 Cmo01g02003 375486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02003 231 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g02003 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo01g02003 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo01g02003 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo01g02003 231 Coils Coil 84 111 - -
Cmo01g02003 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo01g02003 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Cmo01g02003 231 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Cmo01g02003 231 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Cmo01g02003 231 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cmo01g02003 231 Pfam K-box region 83 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g02003 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo01g02003 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo01g02003 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo01g02003 231 PANTHER APETALA3 1 228 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02003 Cmo09g00122 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01418 Cmo-Chr1:11128669 Cmo01g02003 Cmo-Chr1:14129143 1.81E-43 dispersed
Cmo01g02003 Cmo-Chr1:14129143 Cmo09g00760 Cmo-Chr9:3841900 1.10E-44 dispersed
Cmo01g02003 Cmo-Chr1:14129143 Cmo09g00122 Cmo-Chr9:563424 6.64E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9162 PF01486 K-box 3.00E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02003 K09264 - csv:101218008 394.815