Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02006 ATGAAGATTCAGTGCGACGTCTGCAACAAAGACGAGGCGCTGCTTTTCTGCACCGCCGACGACGCCGCCCTCTGCTCCACCTGCGACCACCGCGTCCACCACGCCAACGTCCTCGCCTCCAAGCACCTCCGCTTCCCCCTCCTCCACCCCAACAACAACAATTTCCCACTCTGCGACATCTGCCAGGAGAGACGAGCGTTCCTATTCTGTCAGCAGGACCGGGCGATTCTTTGCAAAGACTGCGACTTTCCAATCCATTCGGTGAATGAGCTTACCCAGAAGCACGATCGGTTCCTTCTCACCGGCGTGAAGCTCTCTTGTGAGTCTGCCGGGAATGTGCCGTCGTCTTCCTCTATGTCCGAGAAGATGGCTAATGCTTCTTCTGCCCCTGTTTCGAATTCGCCTTCAATTGCGGAGAGTTCGACTTCTAACGCCCAGACGGTGGGTGCGTCCACCGATGGGTGTGAGGCGATGAATGGTGTGGAGTATTTTATTGACGCGATTTCTGGGTGGCATTTTGATGACTTTCTTGATTCTTCCTCTACCGATGCTCCTCCTTTTGGTTTCTGTAAGCTGCAGAGCGATGAGGTTGATGGTGATTGGGTTTTTCAATTTGTTGATGATTTAGTTGAATTAGAAACGAGCGGGGATTCTTTCTCGTCGGAGGATTGGGGAATTAGGAGCCCAGAGGAGGAGGCTGCCGTACCTCTGTTTTGTTCAGAGATTGAGATGGAGGAAAGGAAGAAAGGTAGAACCTTGAAGGAGAAAACCAGAGGAGGAGGTGGTGGTGGTGGCGGTGACGGTGGGATTTCGGTGCCGGAGGTTGATCTCCGGCCGAGAAGATTCAGATCCTCTTGA 858 53.15 MKIQCDVCNKDEALLFCTADDAALCSTCDHRVHHANVLASKHLRFPLLHPNNNNFPLCDICQERRAFLFCQQDRAILCKDCDFPIHSVNELTQKHDRFLLTGVKLSCESAGNVPSSSSMSEKMANASSAPVSNSPSIAESSTSNAQTVGASTDGCEAMNGVEYFIDAISGWHFDDFLDSSSTDAPPFGFCKLQSDEVDGDWVFQFVDDLVELETSGDSFSSEDWGIRSPEEEAAVPLFCSEIEMEERKKGRTLKEKTRGGGGGGGGDGGISVPEVDLRPRRFRSS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14141132 14142277 + CmoCh01G020060.1 Cmo01g02006 375489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02006 285 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cmo01g02006 285 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo01g02006 285 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Cmo01g02006 285 CDD Bbox1_BBX-like 57 100 - -
Cmo01g02006 285 MobiDBLite consensus disorder prediction 112 149 - -
Cmo01g02006 285 MobiDBLite consensus disorder prediction 248 285 - -
Cmo01g02006 285 Gene3D Classic Zinc Finger 1 96 - -
Cmo01g02006 285 CDD Bbox1_BBX-like 5 47 - -
Cmo01g02006 285 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Cmo01g02006 285 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo01g02006 285 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cmo01g02006 285 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02006 - - - mcha:111007828 320.857
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02006 Cmo12g00380 CCT
Cmo01g02006 Cmo05g00289 CCT
Cmo01g02006 Cmo05g00289 ECH
Cmo01g02006 Cmo12g00380 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02006 Cmo-Chr1:14141132 Cmo11g01107 Cmo-Chr11:6193606 3.20E-51 dispersed
Cmo19g00699 Cmo-Chr19:7382490 Cmo01g02006 Cmo-Chr1:14141132 1.76E-19 dispersed
Cmo01g02006 Cmo-Chr1:14141132 Cmo12g00380 Cmo-Chr12:2352746 8.25E-60 wgd
Cmo01g02006 Cmo-Chr1:14141132 Cmo20g00825 Cmo-Chr20:4095081 7.67E-48 wgd
Cmo01g02006 Cmo-Chr1:14141132 Cmo03g00728 Cmo-Chr3:6238667 5.17E-21 wgd
Cmo01g02006 Cmo-Chr1:14141132 Cmo05g00289 Cmo-Chr5:1251990 8.88E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00329 CST 6 323 C2C2-CO-like Transcription Factor Family AT5G15850 51.1 2.6e-42 170.2
Cmo12g00329 CST 4 332 C2C2-CO-like Transcription Factor Family AT3G02380 50.7 1.4e-40 164.5
Cmo05g00340 CST 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 4.1e-83 305.8
Cmo12g00329 CST 1 329 C2C2-CO-like Transcription Factor Family AT5G24930 59.4 2.4e-75 280.0
Cmo11g00414 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.9e-56 217.2
Cmo10g00449 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 9.5e-56 214.9
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 56.0 2.0e-93 340.1
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 5.1e-89 325.5
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.2e-87 318.2
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 4.1e-86 315.8
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 7.5e-88 321.6
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 2.2e-87 320.1
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.7e-84 310.5
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 6.5e-84 308.5
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 7.5e-88 321.6
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 2.2e-87 320.1
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.7e-84 310.5
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 6.5e-84 308.5
Cmo11g01107 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 1.2e-52 204.5
Cmo01g02006 CCT,ECH 1 196 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.9e-51 199.9
Cmo20g00825 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 51.2 1.8e-45 180.6
Cmo04g00707 CST 1 276 C2C2-CO-like Transcription Factor Family AT1G78600 50.2 1.8e-74 276.9
Cmo04g00794 CCT,ECH 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 3.8e-55 211.8
Cmo07g00440 CCT,CST,ECH 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 7.0e-49 191.0
Cmo03g00728 CCT,CST,ECH 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cmo16g00660 . 1 97 C2C2-CO-like Transcription Factor Family AT2G21320 81.4 5.0e-39 158.3
Cmo04g00794 CCT,ECH 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.4 2.8e-56 215.7
Cmo07g00440 CCT,CST,ECH 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 68.2 4.2e-52 201.8
Cmo03g00728 CCT,CST,ECH 1 168 C2C2-CO-like Transcription Factor Family AT4G38960 60.1 2.8e-48 189.1
Cmo16g00660 . 1 97 C2C2-CO-like Transcription Factor Family AT4G38960 81.4 2.2e-40 162.9
Cmo11g01107 . 1 233 C2C2-CO-like Transcription Factor Family AT4G39070 53.8 4.6e-54 208.8
Cmo12g00380 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9163 PF00643 zf-B_box 1.20E-06 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g02006 Cmo_Chr01 FPKM 8.209172 9.663964 3.814571 3.886345 2.042943 1.066763 2.124586 0.548908 0.914626 0.714017