Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g02006 | ATGAAGATTCAGTGCGACGTCTGCAACAAAGACGAGGCGCTGCTTTTCTGCACCGCCGACGACGCCGCCCTCTGCTCCACCTGCGACCACCGCGTCCACCACGCCAACGTCCTCGCCTCCAAGCACCTCCGCTTCCCCCTCCTCCACCCCAACAACAACAATTTCCCACTCTGCGACATCTGCCAGGAGAGACGAGCGTTCCTATTCTGTCAGCAGGACCGGGCGATTCTTTGCAAAGACTGCGACTTTCCAATCCATTCGGTGAATGAGCTTACCCAGAAGCACGATCGGTTCCTTCTCACCGGCGTGAAGCTCTCTTGTGAGTCTGCCGGGAATGTGCCGTCGTCTTCCTCTATGTCCGAGAAGATGGCTAATGCTTCTTCTGCCCCTGTTTCGAATTCGCCTTCAATTGCGGAGAGTTCGACTTCTAACGCCCAGACGGTGGGTGCGTCCACCGATGGGTGTGAGGCGATGAATGGTGTGGAGTATTTTATTGACGCGATTTCTGGGTGGCATTTTGATGACTTTCTTGATTCTTCCTCTACCGATGCTCCTCCTTTTGGTTTCTGTAAGCTGCAGAGCGATGAGGTTGATGGTGATTGGGTTTTTCAATTTGTTGATGATTTAGTTGAATTAGAAACGAGCGGGGATTCTTTCTCGTCGGAGGATTGGGGAATTAGGAGCCCAGAGGAGGAGGCTGCCGTACCTCTGTTTTGTTCAGAGATTGAGATGGAGGAAAGGAAGAAAGGTAGAACCTTGAAGGAGAAAACCAGAGGAGGAGGTGGTGGTGGTGGCGGTGACGGTGGGATTTCGGTGCCGGAGGTTGATCTCCGGCCGAGAAGATTCAGATCCTCTTGA | 858 | 53.15 | MKIQCDVCNKDEALLFCTADDAALCSTCDHRVHHANVLASKHLRFPLLHPNNNNFPLCDICQERRAFLFCQQDRAILCKDCDFPIHSVNELTQKHDRFLLTGVKLSCESAGNVPSSSSMSEKMANASSAPVSNSPSIAESSTSNAQTVGASTDGCEAMNGVEYFIDAISGWHFDDFLDSSSTDAPPFGFCKLQSDEVDGDWVFQFVDDLVELETSGDSFSSEDWGIRSPEEEAAVPLFCSEIEMEERKKGRTLKEKTRGGGGGGGGDGGISVPEVDLRPRRFRSS | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14141132 | 14142277 | + | CmoCh01G020060.1 | Cmo01g02006 | 375489 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g02006 | 285 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
Cmo01g02006 | 285 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Cmo01g02006 | 285 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 237 | - | - | |
Cmo01g02006 | 285 | CDD | Bbox1_BBX-like | 57 | 100 | - | - | |
Cmo01g02006 | 285 | MobiDBLite | consensus disorder prediction | 112 | 149 | - | - | |
Cmo01g02006 | 285 | MobiDBLite | consensus disorder prediction | 248 | 285 | - | - | |
Cmo01g02006 | 285 | Gene3D | Classic Zinc Finger | 1 | 96 | - | - | |
Cmo01g02006 | 285 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Cmo01g02006 | 285 | Pfam | B-box zinc finger | 56 | 96 | IPR000315 | GO:0008270 | |
Cmo01g02006 | 285 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Cmo01g02006 | 285 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
Cmo01g02006 | 285 | PANTHER | B-BOX ZINC FINGER PROTEIN 21 | 1 | 237 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g02006 | Cmo12g00380 | CCT | |
Cmo01g02006 | Cmo05g00289 | CCT | |
Cmo01g02006 | Cmo05g00289 | ECH | |
Cmo01g02006 | Cmo12g00380 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g02006 | Cmo-Chr1:14141132 | Cmo11g01107 | Cmo-Chr11:6193606 | 3.20E-51 | dispersed | |
Cmo19g00699 | Cmo-Chr19:7382490 | Cmo01g02006 | Cmo-Chr1:14141132 | 1.76E-19 | dispersed | |
Cmo01g02006 | Cmo-Chr1:14141132 | Cmo12g00380 | Cmo-Chr12:2352746 | 8.25E-60 | wgd | |
Cmo01g02006 | Cmo-Chr1:14141132 | Cmo20g00825 | Cmo-Chr20:4095081 | 7.67E-48 | wgd | |
Cmo01g02006 | Cmo-Chr1:14141132 | Cmo03g00728 | Cmo-Chr3:6238667 | 5.17E-21 | wgd | |
Cmo01g02006 | Cmo-Chr1:14141132 | Cmo05g00289 | Cmo-Chr5:1251990 | 8.88E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9163 | PF00643 | zf-B_box | 1.20E-06 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g02006 | - | - | mcha:111007828 | 320.857 |