Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02006 ATGAAGATTCAGTGCGACGTCTGCAACAAAGACGAGGCGCTGCTTTTCTGCACCGCCGACGACGCCGCCCTCTGCTCCACCTGCGACCACCGCGTCCACCACGCCAACGTCCTCGCCTCCAAGCACCTCCGCTTCCCCCTCCTCCACCCCAACAACAACAATTTCCCACTCTGCGACATCTGCCAGGAGAGACGAGCGTTCCTATTCTGTCAGCAGGACCGGGCGATTCTTTGCAAAGACTGCGACTTTCCAATCCATTCGGTGAATGAGCTTACCCAGAAGCACGATCGGTTCCTTCTCACCGGCGTGAAGCTCTCTTGTGAGTCTGCCGGGAATGTGCCGTCGTCTTCCTCTATGTCCGAGAAGATGGCTAATGCTTCTTCTGCCCCTGTTTCGAATTCGCCTTCAATTGCGGAGAGTTCGACTTCTAACGCCCAGACGGTGGGTGCGTCCACCGATGGGTGTGAGGCGATGAATGGTGTGGAGTATTTTATTGACGCGATTTCTGGGTGGCATTTTGATGACTTTCTTGATTCTTCCTCTACCGATGCTCCTCCTTTTGGTTTCTGTAAGCTGCAGAGCGATGAGGTTGATGGTGATTGGGTTTTTCAATTTGTTGATGATTTAGTTGAATTAGAAACGAGCGGGGATTCTTTCTCGTCGGAGGATTGGGGAATTAGGAGCCCAGAGGAGGAGGCTGCCGTACCTCTGTTTTGTTCAGAGATTGAGATGGAGGAAAGGAAGAAAGGTAGAACCTTGAAGGAGAAAACCAGAGGAGGAGGTGGTGGTGGTGGCGGTGACGGTGGGATTTCGGTGCCGGAGGTTGATCTCCGGCCGAGAAGATTCAGATCCTCTTGA 858 53.15 MKIQCDVCNKDEALLFCTADDAALCSTCDHRVHHANVLASKHLRFPLLHPNNNNFPLCDICQERRAFLFCQQDRAILCKDCDFPIHSVNELTQKHDRFLLTGVKLSCESAGNVPSSSSMSEKMANASSAPVSNSPSIAESSTSNAQTVGASTDGCEAMNGVEYFIDAISGWHFDDFLDSSSTDAPPFGFCKLQSDEVDGDWVFQFVDDLVELETSGDSFSSEDWGIRSPEEEAAVPLFCSEIEMEERKKGRTLKEKTRGGGGGGGGDGGISVPEVDLRPRRFRSS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14141132 14142277 + CmoCh01G020060.1 Cmo01g02006 375489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02006 285 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cmo01g02006 285 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo01g02006 285 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Cmo01g02006 285 CDD Bbox1_BBX-like 57 100 - -
Cmo01g02006 285 MobiDBLite consensus disorder prediction 112 149 - -
Cmo01g02006 285 MobiDBLite consensus disorder prediction 248 285 - -
Cmo01g02006 285 Gene3D Classic Zinc Finger 1 96 - -
Cmo01g02006 285 CDD Bbox1_BBX-like 5 47 - -
Cmo01g02006 285 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Cmo01g02006 285 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo01g02006 285 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cmo01g02006 285 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 237 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02006 Cmo12g00380 CCT
Cmo01g02006 Cmo05g00289 CCT
Cmo01g02006 Cmo05g00289 ECH
Cmo01g02006 Cmo12g00380 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02006 Cmo-Chr1:14141132 Cmo11g01107 Cmo-Chr11:6193606 3.20E-51 dispersed
Cmo19g00699 Cmo-Chr19:7382490 Cmo01g02006 Cmo-Chr1:14141132 1.76E-19 dispersed
Cmo01g02006 Cmo-Chr1:14141132 Cmo12g00380 Cmo-Chr12:2352746 8.25E-60 wgd
Cmo01g02006 Cmo-Chr1:14141132 Cmo20g00825 Cmo-Chr20:4095081 7.67E-48 wgd
Cmo01g02006 Cmo-Chr1:14141132 Cmo03g00728 Cmo-Chr3:6238667 5.17E-21 wgd
Cmo01g02006 Cmo-Chr1:14141132 Cmo05g00289 Cmo-Chr5:1251990 8.88E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9163 PF00643 zf-B_box 1.20E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02006 - - mcha:111007828 320.857