Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02017 ATGGGCTCTGTGGATGAGAAGCTCAAAACAATAGGGGGGTTCATTAGTAACGCCCCACAGCCTAACCTTCTCGACGACATGAAATTGTTGAAGGAAATGCAAGATCAAACTGGGGCCCGGAAGGCTATAAACTCCGAGCTATGGCACGCTTGTGCTGGTCCGCTTGTTTCCTTGCCCCATATGGGCAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCTAATCTTCCCTCTCAGTTGATGTGCCAAGTTCATAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTATGCTCAGATGAGTCTTCAACCGGTGAACTCCGAAAAAGATGTCTTCATAGTTCCGGACTTTGGACTACGGCCAAGTAAACATCCAAACGAGTTCTTCTGTAAAACTTTGACTGCCAGTGACACCAGCACTCATGGTGGGTTTTCAGTGCCACGCAGAGCTGCTGAAAAGCTCTTTCCTCCATTGGATTACACAATGCAACCACCAACTCAAGAGCTCGTTGTCCGTGATTTGCACGACAATACCTGGACTTTTCGCCACATATATCGGGGGCAGCCGAAGCGACACCTTCTCACAACCGGATGGAGTCTATTCGTCGGGGCCAAGAGGCTTAGAGCTGGCGATTCTGTCCTTTTTATCAGGGATGAAAAGTCACAGTTGCTCGTTGGAGTGAGGCGTGCTAACCGGCAACAATCAACGTTGCCATCATCGGTTCTATCTGCTGATAGTATGCACATAGGGGTTCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGGAGTCCATTCACAATCTTCTACAACCCCAGAGCATGTCCTTCAGAGTTTGTTATTCCCTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTTGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATACATGGGAACAATTGTTGGAATTAGCGACTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGCGAAATCTCCAGTATTCACTGGCATGTTTCTCCGCCGCCACTCTGATAATTTTGTCACAGGTGGAGTGGGATGAGCCAGGGTGCTGCGACAAGCAGAACAGGGTTAGTTCATGGGACATAGAAACCCCAGAAAGTCTCTTCATTTTTCCTTCTCTGACTTCGGGTCTTAAACGCCCATTACACGGTGGGTTCTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATGTTTCATATGCGCCAACTTTATGCTCCGAACCACTGATGAAGATGCTACTGAGGCCTCAACTGGTTAACCTTCACGGCACCACTTTACAGCAGGACATGATGGGGGGTATGCAGCCAGTAACCAATCCCAAAATGCAGCAGCAGCAGGTTACATCGTCGTCTCCTCAGCATCAAAATCATCATCAGCCAGCTCCTTCGCCGTCTACTGATCCCATTATCTCAAATTCATCACCTAAAGCAAATGAACCAGGAAAAGTACAGGATTCGGCGGCCATTGAAAGTGAAGCTCCTACTGGAGCTGAGGCAGATAAGTCGAAATATGAACGTGAAGTTTCAACCTGTCAGTCTAATCCATTGCCGCCGGTTGAATGTGGGGAGGATAAACTCACTGGTAATGAAGTGAATATGCAGACGCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATCCCCATGCAGTTGCAATCCGTATCATCCTGGCCCATGCAGCCTCAGCTGGAATCACTAATCCAACATCCCCAACCAATTGACACGCCTCAGCCTGAATTTCCCAATTCAAATGGTTTGATTTCATCCATGGATGGCGATGGATGCTTGATTAACCCTACTTGTCTACCTCTTTCTGGTGTAATGAGATCACCAGGGAATCTCTCTATGTTGGGATTGCAAGAATCCTCAACAGTGTTCTCTGAGGCTCTTAATTTTCCTATACCCTCTACAGGTCAAGAGATGTGGGACCCACTTAGTAATATAAGGTTCTCTTCTCAAACCAATCATCTCGTCTCGTTCTCCCATCCTGATGCATCTAACCTGATCTGTATGGCTAATGCGAATGTTACGAGAGATGTTTCCGATGAGAGCAACAACCAGAGTGGGATATATGGTTGTTCTAACCTTGAAATCAGTAATGGTGGAAATACTTTGGTTGATCCTGCTGTTTCGAGTACCATTCTTGATGATTATTGCACACTCAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATCACCTCTGCTAGTTTGGGAGATTCTCAGGCTTTCTCCAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCTTGCAATGTGGATTTTGATGAAGGCAATCTTCTGCAGAATGGCTCGTGGAAACAAGTGGTACCGCCCATGAGAACTTACACCAAGGTAGGAATCTGTGGGTTTTCTACTAATTATCTTCCCTACTATATGGTCCAGAAGGCGGGATCAGTTGGTAGGTCTATTGATGTGACAAGTTTTAAGAACTACGAAGAACTGTGCTCTGCTATAGAGTGTATGTTTGGACTTGAAGGGTTGCTTAATGACCCAAGAGGCTCAGGATGGAAACTGGTTTATGTGGATTATGAGAACGACGTGCTGCTTATTGGCGATGATCCCTGGGAGGAATTTGTTAGCTGCGTACGGTGCATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATGAATTGCTCCATATCAGAAGGTGGCCGAGCTTAA 2904 46.25 MGSVDEKLKTIGGFISNAPQPNLLDDMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHMGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVNSEKDVFIVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLVGVRRANRQQSTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQYSLACFSAATLIILSQVEWDEPGCCDKQNRVSSWDIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENVSYAPTLCSEPLMKMLLRPQLVNLHGTTLQQDMMGGMQPVTNPKMQQQQVTSSSPQHQNHHQPAPSPSTDPIISNSSPKANEPGKVQDSAAIESEAPTGAEADKSKYEREVSTCQSNPLPPVECGEDKLTGNEVNMQTLVNQLSFVNQNQIPMQLQSVSSWPMQPQLESLIQHPQPIDTPQPEFPNSNGLISSMDGDGCLINPTCLPLSGVMRSPGNLSMLGLQESSTVFSEALNFPIPSTGQEMWDPLSNIRFSSQTNHLVSFSHPDASNLICMANANVTRDVSDESNNQSGIYGCSNLEISNGGNTLVDPAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGNLLQNGSWKQVVPPMRTYTKVGICGFSTNYLPYYMVQKAGSVGRSIDVTSFKNYEELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGMNCSISEGGRA 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14190585 14194776 - CmoCh01G020170.1 Cmo01g02017 375500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02017 967 Gene3D - 147 250 IPR015300 -
Cmo01g02017 967 ProSiteProfiles PB1 domain profile. 850 937 IPR000270 GO:0005515
Cmo01g02017 967 PANTHER AUXIN RESPONSE FACTOR 5 30 957 - -
Cmo01g02017 967 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo01g02017 967 CDD B3_DNA 148 249 IPR003340 GO:0003677
Cmo01g02017 967 Gene3D - 313 401 - -
Cmo01g02017 967 SUPERFAMILY CAD & PB1 domains 868 932 - -
Cmo01g02017 967 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Cmo01g02017 967 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 957 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo01g02017 967 MobiDBLite consensus disorder prediction 471 560 - -
Cmo01g02017 967 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Cmo01g02017 967 MobiDBLite consensus disorder prediction 471 521 - -
Cmo01g02017 967 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Cmo01g02017 967 Pfam AUX/IAA family 864 940 IPR033389 -
Cmo01g02017 967 Gene3D - 850 942 - -
Cmo01g02017 967 SMART B3_2 149 251 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02017 Cmo09g00115 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02017 Cmo-Chr1:14190585 Cmo05g00767 Cmo-Chr5:4338402 6.23E-32 dispersed
Cmo01g02017 Cmo-Chr1:14190585 Cmo09g00115 Cmo-Chr9:540845 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9164 PF02362 B3 4.00E-21 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02017 K14486 - csv:101216825 1692.55