Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02020 ATGACGGCTGGACTCGGAAAATGCAGCAAAATCCGACACATTGTCAGGCTCCGACAAATGCTCCGACGGTGGCGCAACAAGGCACGAATATCCGCCAATCGTATCCCCTCGGACGTACCTGCCGGACACGTGGCCGTTTGCGTTGGAACGAGCTGTCGACGGTTCGTCGTCCGGGCAACCTACTTGAACCACCCGGTTTTCAAGAAGCTTTTAGTCGAAGCAGAAGAGGAATACGGGTTTAGCAATTCAGGTCCCTTGGCAATCCCTTGCGACGAATCGGTTTTCGAAGAAGTGATCCGGTTCATCTCTAGATCCGAACCACCCAACTCGGGGCGGTTCGTGAAATTGGACGATTATCAGAGTTACTGCCATATCGGAATCAGAAACAGAGTCGATTTCTGGCCGGAATCTCGGCCTTTGCTTCATGGGTTGGCCGAGAAATCCATCTGGTAA 453 52.54 MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQSYCHIGIRNRVDFWPESRPLLHGLAEKSIW 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14202814 14203266 + CmoCh01G020200.1 Cmo01g02020 375503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02020 150 Pfam Auxin responsive protein 16 101 IPR003676 GO:0009733
Cmo01g02020 150 PANTHER SMALL AUXIN-UP RNA-RELATED 6 143 - -
Cmo01g02020 150 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 143 IPR003676 GO:0009733
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02020 Cmo-Chr1:14202814 Cmo19g00716 Cmo-Chr19:7493864 1.23E-64 dispersed
Cmo01g02020 Cmo-Chr1:14202814 Cmo01g02022 Cmo-Chr1:14218591 1.35E-19 proximal
Cmo01g02020 Cmo-Chr1:14202814 Cmo20g00808 Cmo-Chr20:3991241 2.35E-50 wgd
Cmo01g02020 Cmo-Chr1:14202814 Cmo09g00112 Cmo-Chr9:530087 1.23E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02020 K14488 - csv:101216342 289.271