Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02027 ATGGCACTCTCAACTTCCTTAGCAATAAACGCAGAGAAAAGCAGAAAAATGAAACCCATCAACACTAAACGCAGAAAAAAGCACCAACACCCACCTCCCTCCCAACCGCCGCCGCCGCAGCCGCCGCCCTCTGCCCAATCTTCATGGGACCAAATCAAGAACCTCATCACTTGCAAGCAGGTGCGTCTAAATTTCATAGCTTACCCCTACATTTCAAAAATGGAGGCTTCGAGAGTTCACGAGCCGGCAAAACGCTCGCCGGCGAATTCGAAGTTGGGTTCTTCTTGCAGCTCCATTTGTAGGTTTAGAGACGTGGTCCATGGCAACGCCAAAATTGTTCACAGACCCGACAACTCACCGGAAACCAGCTCCCTCGGACAAGAAACTAGGTTACTCACTACAAAAGCTACAAACGGTTCATCGTCTCGTTCTTTGACAGCTCCGACCAGAACCAAAAACGGTGCTTCTGCTTCATACTCCTCTTCTCGAGGATTACAATTACGAAAGCTTTCTGGGTACCCGATTCCGAGGAGTTCTATTTGCCCTTGTCCTCAATGTGGAGAGATGTTCCCCAAAATTGAAAGCTTAGAGCTTCACCAAGCGGTTCGCCACGCTGGTATTTTCCAAATTCTTTTTATGGGTTATTTTAAAAGGGTAAATAGAAAATTGTATAAAAAAATCGCTTTCGTGGCCATGGGGTTTTGCCTTCACTCATACACCACTGCTGACGAGGAGTCTTACTTGGTGTATAAATCTGCACGACCGTTGACTCCACCGACACGAAAATGTAGGTGTCAAATCAAATCCATTAATTTTGTTTGTTTATTTGTCTTTTTAGTTTCGGAGTTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATCATTTTCAAATCAAGCTGGCTAAAAATAGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAAGACTGCCGCGATGCAGTGAAGACACGTGCACTCGCATGCGCTAGAAAAAACCCGCGGTGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCATTGTAGCGAGTTGTTGTGTGACCTCGGCTCACGTGGCTCAACCGGCCTGTGTGGCTCGATTCCCGGCTGCCGTGTCTGCAGCGTTATCCGTCATGGATTCCAGTGCAAGCCCGGTGAACCCGCTGGCGTACGAACCACGGCCAGTAGCGGTAGGGCCCATGATTCGTTCGAATGCGGCGATGGACGGCGGCGGGCGATGTTGGTGTGCCGTGTCATCGCCGGAAGAGTGAAGCGGATCGCGGAGGATTTGTCGGCCGCAGCGGTGGAGGAGGAGAATTTGTCGGCGGCGGCGGCCTCTTACGACTCCGTTTCACGACAGTCCGGGAAGTATTCGAATCTCGAGGAGTTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTCGTGATCTACGAAGCCCTCCAAACCTAA 1491 49.97 MALSTSLAINAEKSRKMKPINTKRRKKHQHPPPSQPPPPQPPPSAQSSWDQIKNLITCKQVRLNFIAYPYISKMEASRVHEPAKRSPANSKLGSSCSSICRFRDVVHGNAKIVHRPDNSPETSSLGQETRLLTTKATNGSSSRSLTAPTRTKNGASASYSSSRGLQLRKLSGYPIPRSSICPCPQCGEMFPKIESLELHQAVRHAGIFQILFMGYFKRVNRKLYKKIAFVAMGFCLHSYTTADEESYLVYKSARPLTPPTRKCRCQIKSINFVCLFVFLVSELGPDDSGRNIVEIIFKSSWLKIDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALACARKNPRCAADGNELLRFHCSELLCDLGSRGSTGLCGSIPGCRVCSVIRHGFQCKPGEPAGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRIAEDLSAAAVEEENLSAAAASYDSVSRQSGKYSNLEELIIFNPKAILPCFVVIYEALQT 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14238762 14240666 + CmoCh01G020270.1 Cmo01g02027 375510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02027 496 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 38 205 - -
Cmo01g02027 496 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 279 495 - -
Cmo01g02027 496 SUPERFAMILY ADP-ribosylation 281 492 - -
Cmo01g02027 496 MobiDBLite consensus disorder prediction 1 48 - -
Cmo01g02027 496 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 279 495 - -
Cmo01g02027 496 MobiDBLite consensus disorder prediction 133 160 - -
Cmo01g02027 496 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 38 205 - -
Cmo01g02027 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 206 IPR013087 -
Cmo01g02027 496 ProSitePatterns Zinc finger C2H2 type domain signature. 181 204 IPR013087 -
Cmo01g02027 496 Gene3D - 277 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02027 - - - csv:101222539 500.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02027 Cmo09g00104 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02027 Cmo-Chr1:14238762 Cmo15g00715 Cmo-Chr15:3476055 6.27E-79 dispersed
Cmo01g02027 Cmo-Chr1:14238762 Cmo09g00104 Cmo-Chr9:494843 1.38E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g225 . Blo12g00885 . Bda03g00290 . . Bma04g00246 . . . Cma01g01969 Cma09g00108 Car01g01540 . . Cpe06g00072 . . . . . . . . . . . . . . . . . . . Lsi04g01739 . Chy04g00422 . . . Bda08g01222 . . Bpe05g00138 . . . Cmo01g02027 Cmo09g00104 . . . Car09g00098 . . . . . . . . . . . . . . . . . . . .
Vvi18g1098 . Blo12g00885 . Bda03g00290 . Bpe04g00246 Bma04g00246 . . . Cma01g01969 Cma09g00108 Car01g01540 . . Cpe06g00072 . . . . . . . . . . . . . . . Cone4ag1968 Cone7ag1881 Cone17ag1400 . Lsi04g01739 Csa03g04274 Chy04g00422 . . . Bda08g01222 . . Bpe05g00138 . Bma05g00163 Sed01g4011 Cmo01g02027 Cmo09g00104 . . . Car09g00098 . . Bhi09g02094 Tan01g5010 Cmetu09g1990 . Hepe01g1619 Mch11g0123 . Cla05g01874 Cam05g2005 Cec05g2017 Cco05g2076 Clacu05g1998 Cmu05g1879 Cre05g2002 . . . Cme04g00474
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0049798 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9165 None None None None Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g02027 Cmo_Chr01 FPKM 19.644392 21.856833 14.046039 15.215918 14.695362 12.34166 14.083666 18.547789 17.22007 19.333788