Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo01g02036 | ATGGCTACCCAAATTTCATTCATATTATGTCTCCTGACTTACCAAATTTTAATCTCAGGTGTATTGTCCACCACTTTCAGCATCGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTTTCAAACGCCGGAGTTTCACCCCTTCCGACAACCGGCTTCGTCCTCGCCGCCGGCGAGTCTCAAACTATCTCCGCTCCCGCGTCTTGGGGCGGTCGGTTCTGGGGCCGAACTCACTGCTCCCAAGACTCCACCGGAAAATTCTCTTGCCTCACTGGAGACTGTGGCTCTGACAAGGTTGAGTGCAGTGGAAACGGTGCAAAGCCGCCGGCAACTCTGGCGGAGTTCACCCTTGACGGCGCCGGCGGGCTGGATTTCTTCGACGTGAGTTTGGTTGACGGTTACAACATCCCTATGCTCGTGGTCCCACAGGGCGGTACCGGCGAGAAGTGCGCGAGCACGGGATGTGTGGTGGATTTGAACGGCGCGTGTCCTTCAGAGCTCAAGCTTACGAGCGTGGACGACGGAAAGAGCATCGCTTGTAAAAGCGCGTGTGAAGCTTTTAACCAACCACAATTCTGTTGTAGTGGCGCGTACGCCACTCCCGATACTTGCAATCCCTCTCCGTATTCGCAAGCGTTTAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGACGATTTAACCAGCACGTTTACATGTCTCAACGCCGACTATATCATCACATTTTGCCCCTCGCCCAACACTAGGTAA | 756 | 53.31 | MATQISFILCLLTYQILISGVLSTTFSIVNKCDYTVWPGILSNAGVSPLPTTGFVLAAGESQTISAPASWGGRFWGRTHCSQDSTGKFSCLTGDCGSDKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCASTGCVVDLNGACPSELKLTSVDDGKSIACKSACEAFNQPQFCCSGAYATPDTCNPSPYSQAFKNACPRAYSYAYDDLTSTFTCLNADYIITFCPSPNTR | 251 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 14274908 | 14275827 | + | CmoCh01G020360.1 | Cmo01g02036 | 375519 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo01g02036 | 251 | PANTHER | OS03G0233200 PROTEIN | 15 | 249 | IPR001938 | - | |
| Cmo01g02036 | 251 | Gene3D | Thaumatin | 24 | 246 | IPR037176 | - | |
| Cmo01g02036 | 251 | SUPERFAMILY | Osmotin, thaumatin-like protein | 24 | 247 | IPR037176 | - | |
| Cmo01g02036 | 251 | SMART | tha2 | 26 | 246 | IPR001938 | - | |
| Cmo01g02036 | 251 | PIRSF | PR5 | 1 | 251 | IPR001938 | - | |
| Cmo01g02036 | 251 | ProSiteProfiles | Thaumatin family profile. | 23 | 246 | IPR001938 | - | |
| Cmo01g02036 | 251 | CDD | TLP-PA | 25 | 245 | - | - | |
| Cmo01g02036 | 251 | PRINTS | Pathogenesis-related protein signature | 25 | 37 | IPR001938 | - | |
| Cmo01g02036 | 251 | PRINTS | Pathogenesis-related protein signature | 125 | 141 | IPR001938 | - | |
| Cmo01g02036 | 251 | PRINTS | Pathogenesis-related protein signature | 73 | 84 | IPR001938 | - | |
| Cmo01g02036 | 251 | PRINTS | Pathogenesis-related protein signature | 236 | 245 | IPR001938 | - | |
| Cmo01g02036 | 251 | Pfam | Thaumatin family | 30 | 246 | IPR001938 | - | |
| Cmo01g02036 | 251 | PANTHER | BNAA02G17480D PROTEIN | 15 | 249 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g02036 | Cmo-Chr1:14274908 | Cmo20g00761 | Cmo-Chr20:3822026 | 6.00E-115 | dispersed | |
| Cmo01g02036 | Cmo-Chr1:14274908 | Cmo12g00355 | Cmo-Chr12:2200133 | 4.38E-87 | wgd | |
| Cmo01g02036 | Cmo-Chr1:14274908 | Cmo16g01286 | Cmo-Chr16:9159750 | 4.53E-88 | wgd | |
| Cmo01g02036 | Cmo-Chr1:14274908 | Cmo03g00705 | Cmo-Chr3:6122594 | 6.20E-97 | wgd | |
| Cmo01g02036 | Cmo-Chr1:14274908 | Cmo05g00314 | Cmo-Chr5:1394117 | 1.40E-135 | wgd | |
| Cmo01g02036 | Cmo-Chr1:14274908 | Cmo07g00418 | Cmo-Chr7:1899508 | 3.44E-95 | wgd | |
| Cmo01g02036 | Cmo-Chr1:14274908 | Cmo09g00095 | Cmo-Chr9:456782 | 1.45E-161 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo01g02036 | - | - | csv:101214136 | 457.988 |