Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02043 ATGGCGACGGTTAATCACCGTTCGCCTAGTCCAACTAGTTTCAAGGGCGATAATACCTACGAGTTCCCGCCGAAAAATCATCTGTGTGCTTGGGCTGCAGTCGTCCGAGGCGAGCCGGAATTGATCTCTCAGTCTCCTTTATCTTCGTCATCATCTTCCTCTACAGTTTCTGCTCCAGAAACACCAGAAACCCCAGCTCCTGCTCCGACGTCTGATTTCTTTGCATCTTCCGAAGAGGGTGGTCCTGTAATGGGGGCAGACTCTTGGCCCGATCTTGCAGAGTCCGCGAAGGCTTCTCCTAAATTAGCAGGACCTACCATTGTACCCCCTCAGCGGCAAGCTACAAATAATGCCAAATCGGACCCCAGTCTGAAACATCCAGTTGTTGCTCGACAAAGATCCTCGAGGCGGTCCGGAGGTGGTGGCAGCTCAATGGGAGGGCCTGCACGAGGCTTTTATCGCCCTCCACCGCCACCGCCACCGCCACCGCCACCACCTTTTCCTGTGTTTCAAATTCCTTGTAGTATGATGCCGGCAATTCCTGATCCTTCTCATGGAGAACCATTATTCAGGAGCAATAATCGGCATCCACGGGCTATTGCAGGCTTTGTACCTCAGACAAATTTTGTTTCTGATTACCCAAACTGCTTTCCTAGGGGGAATTTAGCTCTCCATCCTCGTGGTAATGGTCACTACCAAAACAATCGTGGGGGAAAGCAGCGTGATCAAGATCGTGGAGTATATTCTAATGCTCGAGATGCTCACTTTCGGCAGCACAGGCCCCCTACTAGAGGCTTTATGCGCCCTACGCCACCTTGCACTGCTCAGTTTCCCCAGCCTGTTATACCTTATGGGAATCCGATGCCTCCTCCTGAGTTTGTCTATGTCCCTACATGGCCCTTAGAGACTTACAGAGGAATGCCTTTCATGCCACCGCCTTCAGTGTACTATTCTGCTGTTGATCCCACTCTATCTGCATCACTAGTTAATCAGATTGAATATTATTTCAGTGACACGAATTTGATAACGGATGGATATCTAAGGTGCCAGATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCCGGTTTTTCTATGGTAAAGAATTTGACGACCAATATTCAATGGATAATAGAATCCTTGAGAACGTCGACTGTATTGGAAGTGCAGGATAATAGGATCAGAAAGCGAAATGAGTGGAAGAAATGGATAATAAATTCCAATCAGCTTAGAACTGATTTGACCTCTTCTACTCCAAGTGGATCAGATCATGATAGTCTGGCAACTTCTTTTCAAGGAGTCAGAGTGGATGAAGGTATAAACCAAAGTACGCCAAGCGACACGGATCCTCGTAATACCGAGAGTACTACCAAGATACAATCTTCTGAGTCAGCTGATTCTTCACAACTTACTAATGGGGAGGTGAATCAGGATGTTCAGACTGATATCTGA 1455 47.63 MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSSSSSSSTVSAPETPETPAPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAGPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRRSGGGGSSMGGPARGFYRPPPPPPPPPPPPFPVFQIPCSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNCFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARDAHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPMPPPEFVYVPTWPLETYRGMPFMPPPSVYYSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLIAGFSMVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSSQLTNGEVNQDVQTDI 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14309021 14313597 - CmoCh01G020430.1 Cmo01g02043 375526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02043 484 Gene3D - 317 409 IPR036388 -
Cmo01g02043 484 MobiDBLite consensus disorder prediction 415 484 - -
Cmo01g02043 484 SUPERFAMILY Winged helix DNA-binding domain 318 408 IPR036390 -
Cmo01g02043 484 SMART la 322 400 IPR006630 -
Cmo01g02043 484 MobiDBLite consensus disorder prediction 1 19 - -
Cmo01g02043 484 MobiDBLite consensus disorder prediction 151 170 - -
Cmo01g02043 484 PANTHER LUPUS LA PROTEIN-RELATED 45 466 IPR045180 -
Cmo01g02043 484 PANTHER LA-RELATED PROTEIN 1B 45 466 - -
Cmo01g02043 484 MobiDBLite consensus disorder prediction 1 21 - -
Cmo01g02043 484 MobiDBLite consensus disorder prediction 224 245 - -
Cmo01g02043 484 Pfam La domain 328 383 IPR006630 -
Cmo01g02043 484 ProSiteProfiles La-type HTH domain profile. 318 407 IPR006630 -
Cmo01g02043 484 MobiDBLite consensus disorder prediction 41 170 - -
Cmo01g02043 484 MobiDBLite consensus disorder prediction 42 61 - -
Cmo01g02043 484 CDD LAM 328 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02043 K18757 LARP1; la-related protein 1 - csv:101220887 603.594
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02043 Cmo-Chr1:14309021 Cmo03g00691 Cmo-Chr3:6046039 1.73E-37 dispersed
Cmo01g02043 Cmo-Chr1:14309021 Cmo03g00690 Cmo-Chr3:6039077 6.42E-54 wgd
Cmo01g02043 Cmo-Chr1:14309021 Cmo07g00405 Cmo-Chr7:1857934 3.48E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g02043 Cmo_Chr01 FPKM 3.046623 3.487475 7.557164 7.445793 9.334834 9.784103 8.563232 11.546255 10.792601 10.051948