Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02044 ATGGCGCAAACGACGCCGAATCACACACAGACGGTCTCCGGTTGGGCAGCTCACGATTCTTCCGGCAAGATCACACCGTACACTTTCAAACGCAGAGAGAATGGTCCAGACGACGTGACGATAGAGATTTTGTACTGTGGAATATGCCATACCGATCTTCACTATGCCAAAAACGAGTGGGGCATCACCATGTATCCTGTAGTTCCCGGGCACGAGATGACAGGTGTGATTTCGAAGGTGGGAAGCAACGTGAAGAAGTTCAAAATAGGGGACAGAGTGGGAGTGGGATGTATAGCCGCTTCGTGTTTGAGCTGTGAGTTCTGCCAAGATTCACAAGAGAATTACTGTGAAAAATTGCAGTTTACATACAATGGAATCTTCTGGGATGGGAGCATAACTTATGGCGGATACTCCAAAATGTTTGTTTCAGATCAGAGGTACGTGGTGCACATCCCGGAGAGCCTGCCGATGGACGCTGCGGCGCCGTTGCTGTGCGCTGGGATTACAGTGTTCACGCCCATGAAAGACATGGATCTGATCCACTCACCGAGGAAGAAGGTGGGAGTGGTGGGTCTTGGTGGGCTTGGCCACATAGCTGTCAAATTTGGGAAGGCGTTTGGCCACCATGTGACTGTCATCAGCACCTCCGCTTCCAAGGAGAAAGAAGCTAAAGAACGCCTTGGCGCCGACGAGTTCATAGTCAGTAAAGATCCTCAACAGATGCAGAGGCACAAGAGGACGTTGGATTTTGTGTTGGACACAGTGTCGGCACAGCATTGTATTGGACCAATCTTGGAACTGCTAAAAGTGAATGGGACATTGTCCATTGTGGGGGCTCCAGACAAGCCCATTCAACTGCCCTCCTTCCCTTTAATCTTTGGAAAAAGGACGGTGAAAGGAAGCATTATAGGTGGAATACAAGAAACTCAGGAAATGATGGATTTGTGTGGGAAGTACAACATCACTAGTGATATTGAGGTGGTAAGGCCGGACGACATCAACCATGCTATGGAACGTCTCACTAAGAACGATGTTCGATATCGATTCGTCATTGACATTGCCCAAAATAATACTAAGTTGTAA 1083 48.38 MAQTTPNHTQTVSGWAAHDSSGKITPYTFKRRENGPDDVTIEILYCGICHTDLHYAKNEWGITMYPVVPGHEMTGVISKVGSNVKKFKIGDRVGVGCIAASCLSCEFCQDSQENYCEKLQFTYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDAAAPLLCAGITVFTPMKDMDLIHSPRKKVGVVGLGGLGHIAVKFGKAFGHHVTVISTSASKEKEAKERLGADEFIVSKDPQQMQRHKRTLDFVLDTVSAQHCIGPILELLKVNGTLSIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKYNITSDIEVVRPDDINHAMERLTKNDVRYRFVIDIAQNNTKL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14317207 14319394 + CmoCh01G020440.1 Cmo01g02044 375527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02044 360 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Cmo01g02044 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Cmo01g02044 360 Pfam Alcohol dehydrogenase GroES-like domain 36 150 IPR013154 -
Cmo01g02044 360 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 1 356 - -
Cmo01g02044 360 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
Cmo01g02044 360 PANTHER ALDEHYDE REDUCTASE 1 356 - -
Cmo01g02044 360 CDD CAD1 14 352 - -
Cmo01g02044 360 Gene3D - 15 353 - -
Cmo01g02044 360 Gene3D - 166 323 - -
Cmo01g02044 360 SUPERFAMILY GroES-like 17 177 IPR011032 -
Cmo01g02044 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02044 Cmo-Chr1:14317207 Cmo20g01090 Cmo-Chr20:10384192 1.21E-142 dispersed
Cmo01g02044 Cmo-Chr1:14317207 Cmo16g00363 Cmo-Chr16:1669071 3.77E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02044 K00083 - csv:101213170 669.077