Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo01g02053 | ATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAAACCATATGATCATAAAGCTGATGTTTACAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGGCAGCTGCCTTATGATAACCTGACTCCGTTACAAGCAGCAATGGGCGTGATCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGCATGCAAATCCAATGATCGTGGACTTGCTTGAGAGATGCTGGCGGCAGGATCCATCTTTGAGACCTGAATTTTCTGAAATTACGAAACTTTTGCAGCAAACCCTCAAGGAGGTAGGGAAAAGTTCTGCTGAAACTGTTCAAACTTATTGCTTACAAGGGGACGTTTTCAGGCACCTTACGTTCCTGGAACAGATTACATAA | 402 | 45.52 | MTAETGTYRWMAPEVIEHKPYDHKADVYSFGIVLWELLTGQLPYDNLTPLQAAMGVIQKGLRPKIPRHANPMIVDLLERCWRQDPSLRPEFSEITKLLQQTLKEVGKSSAETVQTYCLQGDVFRHLTFLEQIT | 133 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 14343989 | 14345402 | + | CmoCh01G020530.1 | Cmo01g02053 | 375536 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo01g02053 | 133 | SMART | tyrkin_6 | 1 | 98 | IPR020635 | GO:0004713|GO:0006468 | |
| Cmo01g02053 | 133 | ProSiteProfiles | Protein kinase domain profile. | 1 | 102 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo01g02053 | 133 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 97 | IPR011009 | - | |
| Cmo01g02053 | 133 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 121 | - | - | |
| Cmo01g02053 | 133 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 4 | 111 | - | - | |
| Cmo01g02053 | 133 | PANTHER | SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 | 4 | 111 | - | - | |
| Cmo01g02053 | 133 | Pfam | Protein tyrosine and serine/threonine kinase | 6 | 98 | IPR001245 | GO:0004672|GO:0006468 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g02053 | Cmo-Chr1:14343989 | Cmo11g01758 | Cmo-Chr11:12398386 | 8.38E-56 | dispersed | |
| Cmo01g02053 | Cmo-Chr1:14343989 | Cmo19g00771 | Cmo-Chr19:7783849 | 3.82E-57 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 74073 | PF07714 | PK_Tyr_Ser-Thr | 3.60E-26 | CL0016 | Cmo | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo01g02053 | - | - | cpep:111789352 | 219.55 |