Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02053 ATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAAACCATATGATCATAAAGCTGATGTTTACAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGGCAGCTGCCTTATGATAACCTGACTCCGTTACAAGCAGCAATGGGCGTGATCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGCATGCAAATCCAATGATCGTGGACTTGCTTGAGAGATGCTGGCGGCAGGATCCATCTTTGAGACCTGAATTTTCTGAAATTACGAAACTTTTGCAGCAAACCCTCAAGGAGGTAGGGAAAAGTTCTGCTGAAACTGTTCAAACTTATTGCTTACAAGGGGACGTTTTCAGGCACCTTACGTTCCTGGAACAGATTACATAA 402 45.52 MTAETGTYRWMAPEVIEHKPYDHKADVYSFGIVLWELLTGQLPYDNLTPLQAAMGVIQKGLRPKIPRHANPMIVDLLERCWRQDPSLRPEFSEITKLLQQTLKEVGKSSAETVQTYCLQGDVFRHLTFLEQIT 133
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 14343989 14345402 + CmoCh01G020530.1 Cmo01g02053 375536
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02053 133 SMART tyrkin_6 1 98 IPR020635 GO:0004713|GO:0006468
Cmo01g02053 133 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g02053 133 SUPERFAMILY Protein kinase-like (PK-like) 2 97 IPR011009 -
Cmo01g02053 133 Gene3D Transferase(Phosphotransferase) domain 1 1 121 - -
Cmo01g02053 133 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 111 - -
Cmo01g02053 133 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 4 111 - -
Cmo01g02053 133 Pfam Protein tyrosine and serine/threonine kinase 6 98 IPR001245 GO:0004672|GO:0006468
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02053 Cmo-Chr1:14343989 Cmo11g01758 Cmo-Chr11:12398386 8.38E-56 dispersed
Cmo01g02053 Cmo-Chr1:14343989 Cmo19g00771 Cmo-Chr19:7783849 3.82E-57 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74073 PF07714 PK_Tyr_Ser-Thr 3.60E-26 CL0016 Cmo PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02053 - - cpep:111789352 219.55