Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02054 ATGTCAACGCCGGCGAGGACCAAGAGCTGGAATGGCGACGTGGATAAGCATTACCCACCGGCGCTGGCCACCCATGATGAAGTTATTTCTGACCCCATTGTGTTTTGGGACACTTTGAGGCGTTTTCATTTTGTGATGAACACCAAGTTCATGATTCCTGTGATCGGAGGGAAGGAGCTAGACTTGCATGTTTTGTATTCAGAGGTTACAAGGAGGGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTATATTTAAGTTTTCTCCTACGACCACAAGTGCTTCGTTTGTATTGAGAAAACACTATCTAAGTCTTCTGTACCATTATGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGCCCCTCAAGGTCCCTTTTTGTTCTCCCCTTCCATTTTTCCTTTTTTACTTTATCCGTTATTTTCCATATCGGATTTTGCTGTAAATCTGAGTTGGGTTTTGTCCTTTTCTTCTTCTACAGCGCCATTATCTTTTGGTAGCCCTACGAGGGATAGCGAATTGGCTATGGTGGAATATACTCCCAAGACAACGTCGTTTTCGCCTGCGGAAGGTGACAACCTTTCACATTCCTTGCTTTTCTTCGTGGGGTCAATTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTAGTGACTGTGAAATTGGGATCCGAGGTTCTTAGAGGAGTACTTTACCATCCAGATCAGCCAGTCCCGTCTGATCTACGGCCTCAGTCTACAAATGCTATTATACCTTACACTGGTGGCAGACAGAGACACGCTGGTCGACGACACCGGAGACGCCGGAGAAAGACAGACCCTAACCACCCAAAACCGAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAAACTAAGTCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGCTGATATTCAGGCAACTAACTGTTCAAAACATGGAGAGTAA 1122 45.37 MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQGPFLFSPSIFPFLLYPLFSISDFAVNLSWVLSFSSSTAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRRKTDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14346966 14349144 - CmoCh01G020540.1 Cmo01g02054 375537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02054 373 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Cmo01g02054 373 SUPERFAMILY ARID-like 26 127 IPR036431 GO:0003677
Cmo01g02054 373 Coils Coil 342 369 - -
Cmo01g02054 373 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 286 353 IPR009071 -
Cmo01g02054 373 MobiDBLite consensus disorder prediction 267 284 - -
Cmo01g02054 373 CDD HMGB-UBF_HMG-box 286 350 - -
Cmo01g02054 373 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Cmo01g02054 373 MobiDBLite consensus disorder prediction 246 292 - -
Cmo01g02054 373 SMART ARID_2 26 116 - -
Cmo01g02054 373 SUPERFAMILY HMG-box 283 358 IPR036910 -
Cmo01g02054 373 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 131 - -
Cmo01g02054 373 Gene3D - 25 126 IPR036431 GO:0003677
Cmo01g02054 373 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 131 - -
Cmo01g02054 373 Gene3D High mobility group box domain 270 367 IPR036910 -
Cmo01g02054 373 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 208 365 - -
Cmo01g02054 373 SMART hmgende2 285 354 IPR009071 -
Cmo01g02054 373 Pfam HMG (high mobility group) box 286 353 IPR009071 -
Cmo01g02054 373 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Cmo01g02054 373 SMART bright_3 30 121 IPR001606 GO:0003677
Cmo01g02054 373 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 208 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02054 - - - csv:101219101 533.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02054 Cmo09g00078 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02054 Cmo-Chr1:14346966 Cmo08g00997 Cmo-Chr8:6460455 1.60E-88 dispersed
Cmo01g02054 Cmo-Chr1:14346966 Cmo09g00078 Cmo-Chr9:365833 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00098 . 1 358 ARID Transcription Factor Family AT1G04880 56.5 7.3e-106 381.7
Cmo08g00997 . 45 384 ARID Transcription Factor Family AT1G04880 59.7 5.8e-103 372.1
Cmo06g00165 . 1576 1847 ARID Transcription Factor Family AT1G20910 59.7 1.0e-87 321.2
Cmo01g02101 . 144 452 ARID Transcription Factor Family AT1G20910 53.4 9.0e-76 281.6
Cmo09g00078 CST 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.2e-113 407.1
Cmo01g02054 CST 16 363 ARID Transcription Factor Family AT1G76110 58.4 2.5e-106 382.9
Cmo06g00165 . 1567 1876 ARID Transcription Factor Family AT1G76510 60.3 1.9e-103 373.6
Cmo01g02101 . 143 482 ARID Transcription Factor Family AT1G76510 58.8 1.5e-95 347.4
Cmo01g00019 CCT,ECH 1 771 ARID Transcription Factor Family AT3G43240 59.1 6.0e-262 901.0
Cmo14g01244 . 1 781 ARID Transcription Factor Family AT3G43240 58.2 3.6e-259 891.7
Cmo17g00636 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.6 5.1e-253 871.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9166 PF01388 ARID 7.70E-18 CL0123 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g02054 Cmo_Chr01 FPKM 14.637177 14.829535 12.542826 12.035261 25.672865 29.680019 23.481918 0.83478 0.899566 0.983873