Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02054 ATGTCAACGCCGGCGAGGACCAAGAGCTGGAATGGCGACGTGGATAAGCATTACCCACCGGCGCTGGCCACCCATGATGAAGTTATTTCTGACCCCATTGTGTTTTGGGACACTTTGAGGCGTTTTCATTTTGTGATGAACACCAAGTTCATGATTCCTGTGATCGGAGGGAAGGAGCTAGACTTGCATGTTTTGTATTCAGAGGTTACAAGGAGGGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTATATTTAAGTTTTCTCCTACGACCACAAGTGCTTCGTTTGTATTGAGAAAACACTATCTAAGTCTTCTGTACCATTATGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGCCCCTCAAGGTCCCTTTTTGTTCTCCCCTTCCATTTTTCCTTTTTTACTTTATCCGTTATTTTCCATATCGGATTTTGCTGTAAATCTGAGTTGGGTTTTGTCCTTTTCTTCTTCTACAGCGCCATTATCTTTTGGTAGCCCTACGAGGGATAGCGAATTGGCTATGGTGGAATATACTCCCAAGACAACGTCGTTTTCGCCTGCGGAAGGTGACAACCTTTCACATTCCTTGCTTTTCTTCGTGGGGTCAATTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTAGTGACTGTGAAATTGGGATCCGAGGTTCTTAGAGGAGTACTTTACCATCCAGATCAGCCAGTCCCGTCTGATCTACGGCCTCAGTCTACAAATGCTATTATACCTTACACTGGTGGCAGACAGAGACACGCTGGTCGACGACACCGGAGACGCCGGAGAAAGACAGACCCTAACCACCCAAAACCGAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAAACTAAGTCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGCTGATATTCAGGCAACTAACTGTTCAAAACATGGAGAGTAA 1122 45.37 MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQGPFLFSPSIFPFLLYPLFSISDFAVNLSWVLSFSSSTAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRRKTDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14346966 14349144 - CmoCh01G020540.1 Cmo01g02054 375537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02054 373 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Cmo01g02054 373 SUPERFAMILY ARID-like 26 127 IPR036431 GO:0003677
Cmo01g02054 373 Coils Coil 342 369 - -
Cmo01g02054 373 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 286 353 IPR009071 -
Cmo01g02054 373 MobiDBLite consensus disorder prediction 267 284 - -
Cmo01g02054 373 CDD HMGB-UBF_HMG-box 286 350 - -
Cmo01g02054 373 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Cmo01g02054 373 MobiDBLite consensus disorder prediction 246 292 - -
Cmo01g02054 373 SMART ARID_2 26 116 - -
Cmo01g02054 373 SUPERFAMILY HMG-box 283 358 IPR036910 -
Cmo01g02054 373 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 131 - -
Cmo01g02054 373 Gene3D - 25 126 IPR036431 GO:0003677
Cmo01g02054 373 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 131 - -
Cmo01g02054 373 Gene3D High mobility group box domain 270 367 IPR036910 -
Cmo01g02054 373 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 208 365 - -
Cmo01g02054 373 SMART hmgende2 285 354 IPR009071 -
Cmo01g02054 373 Pfam HMG (high mobility group) box 286 353 IPR009071 -
Cmo01g02054 373 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Cmo01g02054 373 SMART bright_3 30 121 IPR001606 GO:0003677
Cmo01g02054 373 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 208 365 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02054 Cmo09g00078 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02054 Cmo-Chr1:14346966 Cmo08g00997 Cmo-Chr8:6460455 1.60E-88 dispersed
Cmo01g02054 Cmo-Chr1:14346966 Cmo09g00078 Cmo-Chr9:365833 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9166 PF01388 ARID 7.70E-18 CL0123 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02054 - - csv:101219101 533.102