Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02057 ATGGCGGTCGATAAACTTCTGAAAGATGAAGCGAGCGAAGAGAAGGGAGAGCGTGCTAGAATGGCATCATTCATTGGTGCTATGGCGATTGCTGATTTGGTTAAGACAACATTAGGACCAAAGGGGATGGATAAAATTCTCCAATCTACTGGCAGAGGAAGGCAAGTCACTGTCACCAATGATGGTGCCACCATTTTAAAGTCTCTCCATATCGATAATCCAGCTGCCAAAGTGCTTGTCGGTATCCTTTATGTCAGTATTTACCATGTTTATGATCAAGGCAATTTCATGATTATTGTAGTTTCAGAAGTTCAAGATGATGAAGTGGGTGATGGCACAACCTCAGTTGTTGTTTTGGCTGGAGAACTTCTAAGGGAAGCAGAGAAGTTGGTTGCTTCAAAGATTCATCCAATGACAATTATAGCAGGTTATAGAATGGCTGCAGAATGTGCCCGTAATGCATTGCTGCAGAAAGTGGTGGATAACAAATCAGATTTAGAGAAATTTAAATCAGACTTGATGAAGATTGCAATGACTACTCTGAGTTCCAAAATTCTATCACAAGACAAGGAACATTTTGCTCAATTGGCAGTGGATGCCGTTATGAGGCTAAAGGGGAGCACAAACTTGGAGTCAATTCAAATCATCAAGAAACCTGGAGGATCGTTGAAGGATTCCTTTTTAGATGAAGGGTTTATTCTTGACAAAAAAATTGGTATTGGCCAACCCAAGCGCATAGAGAATGCCAAAATTTTAGTGGCAAATACTGCTATGGACACCGACAAAGTCAAGATTTATGGTGCTCGAGTTCGAGTTGATTCAATGGCAAGAGTTGCTGAAATTGAGGGTGCTGAAAAGGATAAAATGAGAGAGAAGGTGAAGAAGATAATTGGTCATGGAATCAACTGCTTTGTTAACAGACAGTTGATCTACAATTTCCCGGAGGAACTATTTGCAGATGCAGGAATACTTGCCATTGAGCATGCTGATTTTGATGGCATAGAGCGTCTGGCTTTAGTAACTGGTGGTGAGATTGCTTCAACTTTTGACAATCCGGAATCTGTGAAGCTTGGACATTGCAAGTTGATTGAGGAGATTATGATTGGCGAGGACAAACTGATCCATTTTTCTGGTGTGGGAATGGGTCAGGCGTGTACAATTGTGCTAAGGGGTGCAAGTCATCACGTCCTTGATGAGGCTGAAAGGTCTCTGCATGATGCCTTGTGTGTACTGTCTCAGACAGTCAATGACAGCAGAGTCCTGCTTGGAGGTGGATGGCCCGAGATGATTATGTCAAAAGAAGTAGATGAGTTGGCTAGGAAGACTCCTGGGAAGAAATCACACGCCATTGAAGCTTTTTCACGTGCTCTACAGGCTATTCCAACAATCATTGCTGATAATGCTGGGTTGGATAGTGCTGACTTGATTGCGCAGCTCCGGGCTGAGCATCACAAGGAAGGTTGCAATGCAGGGATCGACGTCATCTCTGGTTCGGTAGGGGATATGGCTGAACTTGGTATCTCAGAAGCTTTCAAAGTGAAGCAGGCCGTATTGCTTTCTGCAACGGAGGCTGCTGAGATGATTCTTAGAGTTGATGAAATCATCACATGTGCCCCTAGGAGGAGAGAAGATAGAATGGTTGGTCGGATTTTGTTAGGGAGGTTGCATTTTTCTTGCAAGAATTTTGGGTTTTCTTCACTGCCTAGTTTTTCTGATCGTGTGGTTCTTTTATGGAGCGAACGGGACGAATTGCAAGCGAATCCTGAGGCGACATTAGTTTCTTCCGCTACTGAAGAAGCCATTTCTCAGTATAATCAACTGCAGCAACTTAGCAATGTCGCTCCGCAGATGCCTTCTCACGCGATCAAAGACCTGTTGTCGATTGGCGATTGCAAAGCTAGTTCAGGTGGTTTTCGCATCCGTTTAACTTATAGTCATCCTAAAGCTTCAAACGGCAATGATAATTCCATCAAAAGAAACCAGAACGATTGCAAGATGACAAAAATTGAGGTCTTGTTGTTTCTACTTCCTGAACCCTACAGGGATGCTGCAATCATTTCCTATACTTCTAGAAACTCAGTGTATATGAATTTATTTGTATTTGTTTCTGGCAATGATGAACCCTCGGATATTTCAAATTGTAACGCCAATTCTGTCGTTGATGATTGTTTCCACCCTTCACAAGAAGCTGAATTTCCTCAAGAAAAGTATTCAAGAAATGTGAGTCAAACACGATGGGTTGTTGGTGGTGAAAGAATGGGAGAAGCATCGGTCGAGGAGATTCTAGGCAACAATATTCTTCCCCTGTGTCGAGGTGATAGTTACAAGTTCCATGCAGCTGGTAGAGAAGATCTCGATGTACTGGAAATCTTATTTCACCCAAGTGACAAATGA 2394 42.73 MAVDKLLKDEASEEKGERARMASFIGAMAIADLVKTTLGPKGMDKILQSTGRGRQVTVTNDGATILKSLHIDNPAAKVLVGILYVSIYHVYDQGNFMIIVVSEVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMAAECARNALLQKVVDNKSDLEKFKSDLMKIAMTTLSSKILSQDKEHFAQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMARVAEIEGAEKDKMREKVKKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVGMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMIMSKEVDELARKTPGKKSHAIEAFSRALQAIPTIIADNAGLDSADLIAQLRAEHHKEGCNAGIDVISGSVGDMAELGISEAFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRMVGRILLGRLHFSCKNFGFSSLPSFSDRVVLLWSERDELQANPEATLVSSATEEAISQYNQLQQLSNVAPQMPSHAIKDLLSIGDCKASSGGFRIRLTYSHPKASNGNDNSIKRNQNDCKMTKIEVLLFLLPEPYRDAAIISYTSRNSVYMNLFVFVSGNDEPSDISNCNANSVVDDCFHPSQEAEFPQEKYSRNVSQTRWVVGGERMGEASVEEILGNNILPLCRGDSYKFHAAGREDLDVLEILFHPSDK 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14360794 14372141 - CmoCh01G020570.1 Cmo01g02057 375540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02057 797 CDD TCP1_beta 7 541 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Cmo01g02057 797 Gene3D GroEL 230 382 IPR027409 -
Cmo01g02057 797 Gene3D - 27 535 IPR027413 -
Cmo01g02057 797 PANTHER CHAPERONIN 5 544 IPR017998 GO:0140662
Cmo01g02057 797 Pfam TCP-1/cpn60 chaperonin family 30 536 IPR002423 GO:0005524
Cmo01g02057 797 Gene3D - 735 791 - -
Cmo01g02057 797 ProSitePatterns Chaperonins TCP-1 signature 1. 35 47 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cmo01g02057 797 SUPERFAMILY GroEL apical domain-like 225 391 IPR027409 -
Cmo01g02057 797 Gene3D - 161 418 IPR027410 -
Cmo01g02057 797 TIGRFAM chap_CCT_beta: T-complex protein 1, beta subunit 6 542 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Cmo01g02057 797 ProSitePatterns Chaperonins TCP-1 signature 2. 58 74 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cmo01g02057 797 ProSitePatterns Chaperonins TCP-1 signature 3. 105 113 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cmo01g02057 797 SUPERFAMILY GroEL equatorial domain-like 13 538 IPR027413 -
Cmo01g02057 797 SUPERFAMILY GroEL-intermediate domain like 171 418 IPR027410 -
Cmo01g02057 797 PRINTS Tailless complex polypeptide 1 (chaperone) signature 56 74 IPR017998 GO:0140662
Cmo01g02057 797 PRINTS Tailless complex polypeptide 1 (chaperone) signature 420 432 IPR017998 GO:0140662
Cmo01g02057 797 PRINTS Tailless complex polypeptide 1 (chaperone) signature 386 408 IPR017998 GO:0140662
Cmo01g02057 797 PRINTS Tailless complex polypeptide 1 (chaperone) signature 32 48 IPR017998 GO:0140662
Cmo01g02057 797 PANTHER BNAA02G05110D PROTEIN 5 544 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02057 K09494 CCT2; T-complex protein 1 subunit beta - csv:101206611 982.245
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02057 Cmo-Chr1:14360794 Cmo13g00060 Cmo-Chr13:372997 0 dispersed
Cmo01g02057 Cmo-Chr1:14360794 Cmo11g00809 Cmo-Chr11:4014085 2.70E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g138 Blo01g01618 . . . Bpe02g00326 . . Bma01g02393 . . Cma01g01996 . Car01g01568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00955 . . . . . . Cmo01g02057 . . . . . . Cpe02g00049 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005792 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 3 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g02057 Cmo_Chr01 FPKM 14.765152 13.14382 11.514503 12.751353 14.901395 18.787209 10.046331 5.272898 4.278054 5.619348