Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02058 ATGCTGCTTCTAACTTCACCGGCCTTCGCCCTCTCTGCATTCCTCTGCTTCTTCGCCGCCGTCTCTGCAGACGATCCTTACCGTTTCTTCACCTGGAATGTCTCCTACGGCGACATTTACCCTCTCGGCCTCCGCCAGCAGGGCATACTGATCAATGGTCAGTTCCCCGGCCCTGATATCCACTGCGTCACTAACGACAACCTTATTATCAATGTCTTCAACAGCTTAGATGAACCCTTCCTCATTTCCTGGTCATTATTTCTACTCTCCATTTCACTTGTTTTTATTTTACTTTTAACCCTGTTTTCATGTCCCCCAACTCCAACTCCAACTCCAACTCCAACTCCAACTCTGCAACGCAGGAACGGAGTTCAACAGAGAAAGAACTCATACGAAGACGGTGTTTATGGAACAACCTGCCCCATCCCTCCCGGAAAGAACTTCACCTACATTCTCCAAGTCAAGGATCAGATTGGAAGCTTTTACTATTTCCCCTCTCTCGCCTTCCACAAGGCCGCCGGTGGTTTCGGCGCCATCAGAATCCTCAGCCGCCCCCTCATCCCCGTCCCCTTCCCTGATCCCGCCGGTGACTACTCCCTTCTCATCGGAGACTGGTACAGCTCCAATCACACGACCTTGAAGGCTTGTTTGGATCTTGGTAAAAAGCTTCCATTTCCTGATGGAATCCTCATCAATGGCCGTGCCAATTACACCTCCTTCAGCGTTGAACAAGGAAAAACTTACAGGTTGAGAATTTCAAATGTGGGGCTGCAGCATTCCCTCAACTTCCGAATTCAAGGACATCAAATGAAGCTTGTAGAAGTGGAGGGAACACATACCCTTCAAACCACGTACTCCTCGCTCGACATTCATGTCGGTCAGTCTTACTCCGTGCTCGTCACAGCCGACCAGCCAGCTCAAGACTACTACATTGTCGTCTCTTCTCGCTTCACCAACCCAGTGCTCACCACCACCGGCACTCTTCGTTACAGTAACTCTACTGGCCCTGTCAAAGGCCCTCTTCCTGGAGCTCCAACCACAGAAGTCGGCTGGTCTCTCAACCAAGCTCGCTCTATTAGGACCAACCTTACAGCCAGTGGACCAAGGCCAAACCCACAAGGATCATATCACTATGGTCTGGTAAACACAAGCAGAACCATCATACTTGAAAGTTCTGCTGGCCTAATCAACAGCAAACAAAGATATGCGGTTAACAGAGTCTCCTTCATCCCGGCTGACACTCCCCTGAAACTTGCCGACTTCTTCAAAATAGGAGGGGTTTTTCGCGTCGGAAGTATCTCCGATCGCCCTACCGGTGGAGGAATGTACCTCGACACATCAGTGATGGGTGCAGACTACAGAGCGTTTGTTGAAATTGTGTTCCAAAACAATGAGAACATTGTCCAAAGTTGGCATATTGATGGCTACTCTTTCTTTGTGGTCGGTATGGATGGAGGGCAGTGGAGTGAGTCTAGCAGAGGGCAGTACAATCTGCGGGATGCAATAGCTCGTTGTACGATTCAGGTATACCCTTTGTCATGGACTGCAATTTACATGTCCCTGGACAACGTAGGGATGTGGAACATGAGGTCGGAGTTTTGGGCTAGACAGTATCTGGGACAGCAATTCTACCTCCGCGTGTATACGCCATCGACGTCGCTTAGGGACGAGTACCCCATTCCAAAGAATGCTCTTCTGTGTGGCAGGGCAAGTGGTAGGCACACCAGGCCACTCTAA 1737 50.03 MLLLTSPAFALSAFLCFFAAVSADDPYRFFTWNVSYGDIYPLGLRQQGILINGQFPGPDIHCVTNDNLIINVFNSLDEPFLISWSLFLLSISLVFILLLTLFSCPPTPTPTPTPTPTLQRRNGVQQRKNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGAIRILSRPLIPVPFPDPAGDYSLLIGDWYSSNHTTLKACLDLGKKLPFPDGILINGRANYTSFSVEQGKTYRLRISNVGLQHSLNFRIQGHQMKLVEVEGTHTLQTTYSSLDIHVGQSYSVLVTADQPAQDYYIVVSSRFTNPVLTTTGTLRYSNSTGPVKGPLPGAPTTEVGWSLNQARSIRTNLTASGPRPNPQGSYHYGLVNTSRTIILESSAGLINSKQRYAVNRVSFIPADTPLKLADFFKIGGVFRVGSISDRPTGGGMYLDTSVMGADYRAFVEIVFQNNENIVQSWHIDGYSFFVVGMDGGQWSESSRGQYNLRDAIARCTIQVYPLSWTAIYMSLDNVGMWNMRSEFWARQYLGQQFYLRVYTPSTSLRDEYPIPKNALLCGRASGRHTRPL 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14373346 14375853 - CmoCh01G020580.1 Cmo01g02058 375541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02058 578 Gene3D - 195 368 IPR008972 -
Cmo01g02058 578 Gene3D - 379 574 IPR008972 -
Cmo01g02058 578 PANTHER MULTI-COPPER OXIDASE TYPE I FAMILY PROTEIN-RELATED 15 85 - -
Cmo01g02058 578 PANTHER MULTI-COPPER OXIDASE 15 85 IPR045087 -
Cmo01g02058 578 SUPERFAMILY Cupredoxins 22 211 IPR008972 -
Cmo01g02058 578 Gene3D - 27 185 IPR008972 -
Cmo01g02058 578 Pfam Multicopper oxidase 34 85 IPR011707 GO:0005507
Cmo01g02058 578 Pfam Multicopper oxidase 121 184 IPR011707 GO:0005507
Cmo01g02058 578 SUPERFAMILY Cupredoxins 380 569 IPR008972 -
Cmo01g02058 578 PANTHER MULTI-COPPER OXIDASE 119 571 IPR045087 -
Cmo01g02058 578 Pfam Multicopper oxidase 422 550 IPR011706 GO:0005507|GO:0016491
Cmo01g02058 578 SUPERFAMILY Cupredoxins 191 370 IPR008972 -
Cmo01g02058 578 CDD CuRO_3_AAO_like_1 411 532 IPR034275 GO:0005507
Cmo01g02058 578 Pfam Multicopper oxidase 197 332 IPR001117 -
Cmo01g02058 578 PANTHER MULTI-COPPER OXIDASE TYPE I FAMILY PROTEIN-RELATED 119 571 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02058 - - - csv:101215694 976.852
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02058 Cmo05g00336 CCT
Cmo01g02058 Cmo09g00073 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02058 Cmo-Chr1:14373346 Cmo13g00778 Cmo-Chr13:7477425 0 dispersed
Cmo17g01295 Cmo-Chr17:10177565 Cmo01g02058 Cmo-Chr1:14373346 7.55E-173 dispersed
Cmo02g00563 Cmo-Chr2:3234608 Cmo01g02058 Cmo-Chr1:14373346 3.05E-178 transposed
Cmo01g02058 Cmo-Chr1:14373346 Cmo19g00782 Cmo-Chr19:7849422 0 wgd
Cmo01g02058 Cmo-Chr1:14373346 Cmo05g00336 Cmo-Chr5:1497718 0 wgd
Cmo01g02058 Cmo-Chr1:14373346 Cmo09g00073 Cmo-Chr9:325982 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g137 Blo01g01619 . . . Bpe02g00325 . . Bma01g02394 Cmo05g00336 . Cma01g01997 Cma09g00072 Car01g01569 . . . . Bhi04g00090 . . . Hepe10g0675 . . Cla08g01388 Cam08g1861 Cec08g1440 Cco08g1572 Clacu08g1555 . Cre08g1339 . Cone7ag1919 Cone17ag1436 Cone20ag0046 Lsi04g01790 Csa04g02681 . Cme03g01548 Blo17g00723 Blo18g00757 Bda08g01183 . . Bpe05g00167 Bma01g00712 . Sed03g1664 Cmo01g02058 Cmo09g00073 . Cma05g00335 Car05g00279 . . . Bhi09g02935 Tan01g5072 . . Hepe01g2318 Mch11g0074 . Cla05g01582 Cam05g1690 Cec05g1693 Cco05g1740 Clacu05g1679 Cmu05g1570 Cre05g1687 Lsi08g01278 . Chy07g00372 Cme07g00076
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000048 7 10 7 9 7 11 7 11 13 11 8 10 14 9 12 16 10 16 4 10 12 10 16 10 14 12 11 19 23 4 333
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g02058 Cmo_Chr01 FPKM 20.264265 21.98513 24.291679 24.395462 26.981598 25.870092 27.552725 9.607868 8.901868 8.134881