Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02079 ATGGAGTGGGCGAACCAGCAGCAACAGAACAACCAAAGTGAGCAGCAATTGCAAGTGCAAATGCAGGTAGAGCAATTGAGCAACGGCGATGGTGTTGGTGGGCTGTACGTCAAGGTAATGACGGATGAGCAAATGGAGCTCCTCAGGCACCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTCGTGGAGATGCACAAGGCTATCACCGCCCACCAGGACCTTGCCGGAATTAGGGTAGGGAACCTGTACTGCGATCAAATAATGGCATCTGCCGCTGGTCACAAGATAAGCGCTAGGCAGAGGTGGACGCCCACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAACGGGACCCCAAGCAAGCAGAAGATCAAGGAAATAACTCTCCACCTCACACAGCATGGCCAAATTTCAGAAGCAAATGTTTACAATTGGTTTCAGAACAGAAGGGCTCGCTCAAAAAGAAAGCAGGCAAATTCAACACCAAATAATCCAGACTCAGAACCAGACACAGAAGTTGATTCTCCAAAGGACAAAAAGACCAAACCAGAAGAAACCTTCCAAACATATGACCAATTCGTTTCGAATTCCAACAACGTGTATTCTCAGACATCTGATTTAGGCGCTGAAATGCTCGCCTTTGATGCACAATCAAACAAAGGGGACCCCATGTTTCAGTCCTTCGGATCGAGTCATTTAAGTCAGGTGGCCACAGCACAGAATCACACGGGGGCTAATATGGATCAGTTCGACGCATTCTTCAGGAGAGCCGATTTGGATGGTGATGGAAGGATTAGTGGAGCTGAAGCTGTCGCTTTCTTTCAGGGCTCCAATTTGTCTAAAAATGTTCTTGCACAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTTCTTGGGCGACCTGAATTTTATAATGCTCTCAGACTCGTAACTGTTGCTCAAAGTAAGCGAGAGCTAACTCCTGATATTGTTAAGGCAGCACTATATGGTCCTGCTGCAGCGAAAATACCCCCACCAAAGATTGTTCTTCCAGCTGTATCTACCCCTCAATCAACTTCAGTGCCTGCTGCATCTCCTCCACAGATGAGTATGCCTGCACCAACGGCATCTCAAAATTTTGGCTTTAGAGGACAAGGAGTTCCTAGTGTAGGTGTGAATCAGCAGCATATTTCAGCCCAGCCAAACCCTTCCATGAGGTTACCTCAAGCTACACCTGGTGGTGTTGCTTCCAGTACGCAGCTGGTTGTTGCTGCTGCTGAACACTCTGGAGGAGGACACGTACGGAGTTCAAGTCTTCCAAACACAAATGATTGGCTTGGTGGAAGACCAGGTGGTGCCCTTGCTGCTGGGCCTAGAGGAGTTAGCCCTTCAGTGCCTTCCCCAGCTACGTCGTTATCATCAGCTTTAGTGCCTTCTCAGCCTATGCCTAATGATAGAGCACTGGCTGTTTCTGGTAATGGATTTACTTCTAAGTCGGCAATTGGCGCTGACATGTTTTCTATTACTCCATCTCCACATAGACCAGATTCTACCGGACTCAACAATACAGCTAACAGTAGTATTGGCCCATCAGCCATTGTTCCAGTTTCCAGTGTATCCCAACCTTTAAGTCAGCACAAATCGATGGAGTCATTGCAGAGTGCCTTTGTCTCACGGCCATTATCTGGCGCACCGTTACAGCTCTCTCAGTCACCCTTACAGCTCTCCCAGTCACCCTTACAGCTCTCTCAGTCATCACTGGAACCTACCAAGGAGGTTAGAGCAACAGGTCCATCACCACTTATATCTTCTGGGATCACAACTGGAGCCAGGAACTCGACTTCTGAACATGCACAGGTTTCTTGGCCAAAGATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACTGACAGAGACGGTAAAATTACCGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTCAGAGAGTTTTGTTTTGCTTTATATCTAATGGAACGTTACAGGGAAGGTCGACCTCTTCCAGCTGCGCTTCCAAATAATGTTATGTTTGATGAGACTCTGTTGTCCATGACAGGACAACCTAACGTTGTCCACCCAAATGCAGCTTGGGGTCCCCATCCTGGATTTGGACAGCAGCAACCCCAGGTCGCTGCTCGGTCGATGGCACCAACTGCAGGATTGAGGCCCCCAACAAATGTACCTGCTTCGAAGGCTGGTGGTGCTAGACTATCCAATGCGCAGAAATCAAGGACTCCAGTTGGAGAGACAGATAATGTTATTTTGGATTCAAGAGAAAAGATTGAATTCTATCGCACAATGATGCAGGAACTTGTTCTGCATAAAAGCAGATGTGATAGCAGATTAAATGAGATCACAGAAAGGGCATCTGCTGACAGGCGTGAGGCAGAAACTTTGGGGAAAAAATATGAGGAGAAGTACAAGCAAGTGGCTGACATAGCATCTAAGTTAACCATTGAAGAAGCAAATTATCGTGATGTTCAAGTTAAAATACACATCTTGAAACTGTACTTCGATATTGAAAGGAAGACAGAGCTGCATGAAGCAATTATTAAAATGGAACAAGGAGGAAGTGCTGATGGTATTCTTCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGTTGCTTCTTAAGGCTTTAACTGAACGTTGTAAGAGACATGGAATTGATGTTAAGTCGGCTGCTATGATTGAACTTCCAGTAGGTACTAGTCTCACATTAGCCTCAGATTTATACTTTTGCATCTTCTATCTAGATTCCTTTTGCATGTGCTTGCATCTTCTAACTGAACGCTGGCAACCTGGAATTGCGGATGATGCAGCTGTTTGGGATGAAGAGTGGGATAAGTTTGAAGATGAAGGATTTTCCAATGATCTCAATCTCGATCCAAAGCGTGTTTCTGCCTCAAAACCAAAAATGTCACGTAGTCTGGATGAAAAGGATCTAGAAGATTTTAACTCAACTCCTGATTCATCGTTCAATGGCCATGACAAAACCAAAGTGGGGATCTTCTCGAGTACCATCAATCATGGCCTTGAGAGTGAATTTATGTATAGCCACAGTGAAGATGAATCAGCTAGAAGTCCATATGGCAGTCCAGCTGCAAAGACATCTCTAGAAAGCCCTCGTGAATTTTCGGATCCTGTTTATGAAAAAAGTCCGGAAGCATATAGAAGTTTCGATGAGTCAGCTTGGGGCGCCTTTGACAACAATGACGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAATCAGACGCTGAAAAGCACCGGGATATCTTTGGATCCGGTGATTTCGATACGATCTCTGCTAAAACAGCATCCCCCAATGCAGATAGCTTCTTTCAGACAAAAAGCCCATTTTTTGAGGATTCTGTCCCTCCCACTCCTCTCTCTAGATTCGGCAACTCCTCTTCCCCTCGTTATAGTGATGTGGGGGATCACTTCTTTGACAATTCCTCCAGGTTTGATTCTTTCAGCATGCAGGATCCCAGTTTTTCTCCACAACGCGAGAAGTTCTCCAGGTTCGATTCAATAGGCAGTTCTCAAGACTTTGGCCGTAACCAGGAGAAGTTTTCAAGGTTTGATTCTATCAGTAGTAGCATGGACTTCGGCCAGAGCAGCCAGCGGCACGCCAGGTTTGACTCCGCTGGCAGCTCTAGAGATTTCAGCCACAGTGCCTTCTCTTTTGATGATGCTGACCCATTTGGGTCCTCTGCCCCGTTTAAGGCCCCATCAGAGAATCAAAGTCCCAACAAAAGTTCTGATAGTTGGAGAGCTTTCTAA 3858 45.85 MEWANQQQQNNQSEQQLQVQMQVEQLSNGDGVGGLYVKVMTDEQMELLRHQISVYASICEQLVEMHKAITAHQDLAGIRVGNLYCDQIMASAAGHKISARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKEITLHLTQHGQISEANVYNWFQNRRARSKRKQANSTPNNPDSEPDTEVDSPKDKKTKPEETFQTYDQFVSNSNNVYSQTSDLGAEMLAFDAQSNKGDPMFQSFGSSHLSQVATAQNHTGANMDQFDAFFRRADLDGDGRISGAEAVAFFQGSNLSKNVLAQIWMHADQRKTGFLGRPEFYNALRLVTVAQSKRELTPDIVKAALYGPAAAKIPPPKIVLPAVSTPQSTSVPAASPPQMSMPAPTASQNFGFRGQGVPSVGVNQQHISAQPNPSMRLPQATPGGVASSTQLVVAAAEHSGGGHVRSSSLPNTNDWLGGRPGGALAAGPRGVSPSVPSPATSLSSALVPSQPMPNDRALAVSGNGFTSKSAIGADMFSITPSPHRPDSTGLNNTANSSIGPSAIVPVSSVSQPLSQHKSMESLQSAFVSRPLSGAPLQLSQSPLQLSQSPLQLSQSSLEPTKEVRATGPSPLISSGITTGARNSTSEHAQVSWPKMKPTDVQKYTKVFMEVDTDRDGKITEVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAALPNNVMFDETLLSMTGQPNVVHPNAAWGPHPGFGQQQPQVAARSMAPTAGLRPPTNVPASKAGGARLSNAQKSRTPVGETDNVILDSREKIEFYRTMMQELVLHKSRCDSRLNEITERASADRREAETLGKKYEEKYKQVADIASKLTIEEANYRDVQVKIHILKLYFDIERKTELHEAIIKMEQGGSADGILQVRADRIQSDIELLLKALTERCKRHGIDVKSAAMIELPVGTSLTLASDLYFCIFYLDSFCMCLHLLTERWQPGIADDAAVWDEEWDKFEDEGFSNDLNLDPKRVSASKPKMSRSLDEKDLEDFNSTPDSSFNGHDKTKVGIFSSTINHGLESEFMYSHSEDESARSPYGSPAAKTSLESPREFSDPVYEKSPEAYRSFDESAWGAFDNNDDVDSVWGIKPVNTKESDAEKHRDIFGSGDFDTISAKTASPNADSFFQTKSPFFEDSVPPTPLSRFGNSSSPRYSDVGDHFFDNSSRFDSFSMQDPSFSPQREKFSRFDSIGSSQDFGRNQEKFSRFDSISSSMDFGQSSQRHARFDSAGSSRDFSHSAFSFDDADPFGSSAPFKAPSENQSPNKSSDSWRAF 1285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14469978 14479374 + CmoCh01G020790.1 Cmo01g02079 375562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02079 1285 Gene3D - 102 167 - -
Cmo01g02079 1285 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 950 1212 - -
Cmo01g02079 1285 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1213 1285 - -
Cmo01g02079 1285 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 249 767 - -
Cmo01g02079 1285 CDD EH 255 321 IPR000261 GO:0005515
Cmo01g02079 1285 SUPERFAMILY EF-hand 617 696 IPR011992 -
Cmo01g02079 1285 Gene3D - 246 347 - -
Cmo01g02079 1285 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 767 923 - -
Cmo01g02079 1285 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 155 188 - -
Cmo01g02079 1285 SMART HOX_1 98 165 IPR001356 GO:0003677
Cmo01g02079 1285 Pfam EF hand 256 272 IPR002048 GO:0005509
Cmo01g02079 1285 Pfam EF hand 634 648 IPR002048 GO:0005509
Cmo01g02079 1285 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 1143 1166 - -
Cmo01g02079 1285 ProSiteProfiles EF-hand calcium-binding domain profile. 646 681 IPR002048 GO:0005509
Cmo01g02079 1285 PANTHER EH DOMAIN 950 1212 - -
Cmo01g02079 1285 PANTHER EH DOMAIN 1213 1285 - -
Cmo01g02079 1285 PANTHER EH DOMAIN 249 767 - -
Cmo01g02079 1285 PANTHER EH DOMAIN 767 923 - -
Cmo01g02079 1285 SUPERFAMILY Homeodomain-like 99 162 IPR009057 -
Cmo01g02079 1285 Gene3D - 623 696 - -
Cmo01g02079 1285 SMART eh_3 621 701 IPR000261 GO:0005515
Cmo01g02079 1285 SMART eh_3 244 339 IPR000261 GO:0005515
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 568 622 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 463 479 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 599 620 - -
Cmo01g02079 1285 ProSiteProfiles EH domain profile. 649 696 IPR000261 GO:0005515
Cmo01g02079 1285 ProSiteProfiles EF-hand calcium-binding domain profile. 250 285 IPR002048 GO:0005509
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 446 479 - -
Cmo01g02079 1285 SUPERFAMILY EF-hand 250 334 IPR011992 -
Cmo01g02079 1285 SMART efh_1 254 282 IPR002048 GO:0005509
Cmo01g02079 1285 SMART efh_1 650 678 IPR002048 GO:0005509
Cmo01g02079 1285 SMART efh_1 288 316 IPR002048 GO:0005509
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 989 1007 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 1266 1285 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 1184 1246 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 568 591 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 719 768 - -
Cmo01g02079 1285 CDD homeodomain 100 162 IPR001356 GO:0003677
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 1040 1069 - -
Cmo01g02079 1285 ProSiteProfiles EH domain profile. 251 341 IPR000261 GO:0005515
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 982 1014 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 1262 1285 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02079 Cmo09g00049 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02079 Cmo-Chr1:14469978 Cmo11g01788 Cmo-Chr11:12574035 0 dispersed
Cmo09g00049 Cmo-Chr9:208487 Cmo01g02079 Cmo-Chr1:14469978 4.85E-101 transposed
Cmo01g02079 Cmo-Chr1:14469978 Cmo16g01322 Cmo-Chr16:9380247 2.16E-77 wgd
Cmo01g02079 Cmo-Chr1:14469978 Cmo19g00819 Cmo-Chr19:8073698 0 wgd
Cmo01g02079 Cmo-Chr1:14469978 Cmo09g00045 Cmo-Chr9:182454 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9169 PF00046 Homeodomain 6.50E-17 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02079 K12472 - csv:101204624 1506.5