Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02079 ATGGAGTGGGCGAACCAGCAGCAACAGAACAACCAAAGTGAGCAGCAATTGCAAGTGCAAATGCAGGTAGAGCAATTGAGCAACGGCGATGGTGTTGGTGGGCTGTACGTCAAGGTAATGACGGATGAGCAAATGGAGCTCCTCAGGCACCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTCGTGGAGATGCACAAGGCTATCACCGCCCACCAGGACCTTGCCGGAATTAGGGTAGGGAACCTGTACTGCGATCAAATAATGGCATCTGCCGCTGGTCACAAGATAAGCGCTAGGCAGAGGTGGACGCCCACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAACGGGACCCCAAGCAAGCAGAAGATCAAGGAAATAACTCTCCACCTCACACAGCATGGCCAAATTTCAGAAGCAAATGTTTACAATTGGTTTCAGAACAGAAGGGCTCGCTCAAAAAGAAAGCAGGCAAATTCAACACCAAATAATCCAGACTCAGAACCAGACACAGAAGTTGATTCTCCAAAGGACAAAAAGACCAAACCAGAAGAAACCTTCCAAACATATGACCAATTCGTTTCGAATTCCAACAACGTGTATTCTCAGACATCTGATTTAGGCGCTGAAATGCTCGCCTTTGATGCACAATCAAACAAAGGGGACCCCATGTTTCAGTCCTTCGGATCGAGTCATTTAAGTCAGGTGGCCACAGCACAGAATCACACGGGGGCTAATATGGATCAGTTCGACGCATTCTTCAGGAGAGCCGATTTGGATGGTGATGGAAGGATTAGTGGAGCTGAAGCTGTCGCTTTCTTTCAGGGCTCCAATTTGTCTAAAAATGTTCTTGCACAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTTCTTGGGCGACCTGAATTTTATAATGCTCTCAGACTCGTAACTGTTGCTCAAAGTAAGCGAGAGCTAACTCCTGATATTGTTAAGGCAGCACTATATGGTCCTGCTGCAGCGAAAATACCCCCACCAAAGATTGTTCTTCCAGCTGTATCTACCCCTCAATCAACTTCAGTGCCTGCTGCATCTCCTCCACAGATGAGTATGCCTGCACCAACGGCATCTCAAAATTTTGGCTTTAGAGGACAAGGAGTTCCTAGTGTAGGTGTGAATCAGCAGCATATTTCAGCCCAGCCAAACCCTTCCATGAGGTTACCTCAAGCTACACCTGGTGGTGTTGCTTCCAGTACGCAGCTGGTTGTTGCTGCTGCTGAACACTCTGGAGGAGGACACGTACGGAGTTCAAGTCTTCCAAACACAAATGATTGGCTTGGTGGAAGACCAGGTGGTGCCCTTGCTGCTGGGCCTAGAGGAGTTAGCCCTTCAGTGCCTTCCCCAGCTACGTCGTTATCATCAGCTTTAGTGCCTTCTCAGCCTATGCCTAATGATAGAGCACTGGCTGTTTCTGGTAATGGATTTACTTCTAAGTCGGCAATTGGCGCTGACATGTTTTCTATTACTCCATCTCCACATAGACCAGATTCTACCGGACTCAACAATACAGCTAACAGTAGTATTGGCCCATCAGCCATTGTTCCAGTTTCCAGTGTATCCCAACCTTTAAGTCAGCACAAATCGATGGAGTCATTGCAGAGTGCCTTTGTCTCACGGCCATTATCTGGCGCACCGTTACAGCTCTCTCAGTCACCCTTACAGCTCTCCCAGTCACCCTTACAGCTCTCTCAGTCATCACTGGAACCTACCAAGGAGGTTAGAGCAACAGGTCCATCACCACTTATATCTTCTGGGATCACAACTGGAGCCAGGAACTCGACTTCTGAACATGCACAGGTTTCTTGGCCAAAGATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACTGACAGAGACGGTAAAATTACCGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTCAGAGAGTTTTGTTTTGCTTTATATCTAATGGAACGTTACAGGGAAGGTCGACCTCTTCCAGCTGCGCTTCCAAATAATGTTATGTTTGATGAGACTCTGTTGTCCATGACAGGACAACCTAACGTTGTCCACCCAAATGCAGCTTGGGGTCCCCATCCTGGATTTGGACAGCAGCAACCCCAGGTCGCTGCTCGGTCGATGGCACCAACTGCAGGATTGAGGCCCCCAACAAATGTACCTGCTTCGAAGGCTGGTGGTGCTAGACTATCCAATGCGCAGAAATCAAGGACTCCAGTTGGAGAGACAGATAATGTTATTTTGGATTCAAGAGAAAAGATTGAATTCTATCGCACAATGATGCAGGAACTTGTTCTGCATAAAAGCAGATGTGATAGCAGATTAAATGAGATCACAGAAAGGGCATCTGCTGACAGGCGTGAGGCAGAAACTTTGGGGAAAAAATATGAGGAGAAGTACAAGCAAGTGGCTGACATAGCATCTAAGTTAACCATTGAAGAAGCAAATTATCGTGATGTTCAAGTTAAAATACACATCTTGAAACTGTACTTCGATATTGAAAGGAAGACAGAGCTGCATGAAGCAATTATTAAAATGGAACAAGGAGGAAGTGCTGATGGTATTCTTCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGTTGCTTCTTAAGGCTTTAACTGAACGTTGTAAGAGACATGGAATTGATGTTAAGTCGGCTGCTATGATTGAACTTCCAGTAGGTACTAGTCTCACATTAGCCTCAGATTTATACTTTTGCATCTTCTATCTAGATTCCTTTTGCATGTGCTTGCATCTTCTAACTGAACGCTGGCAACCTGGAATTGCGGATGATGCAGCTGTTTGGGATGAAGAGTGGGATAAGTTTGAAGATGAAGGATTTTCCAATGATCTCAATCTCGATCCAAAGCGTGTTTCTGCCTCAAAACCAAAAATGTCACGTAGTCTGGATGAAAAGGATCTAGAAGATTTTAACTCAACTCCTGATTCATCGTTCAATGGCCATGACAAAACCAAAGTGGGGATCTTCTCGAGTACCATCAATCATGGCCTTGAGAGTGAATTTATGTATAGCCACAGTGAAGATGAATCAGCTAGAAGTCCATATGGCAGTCCAGCTGCAAAGACATCTCTAGAAAGCCCTCGTGAATTTTCGGATCCTGTTTATGAAAAAAGTCCGGAAGCATATAGAAGTTTCGATGAGTCAGCTTGGGGCGCCTTTGACAACAATGACGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAATCAGACGCTGAAAAGCACCGGGATATCTTTGGATCCGGTGATTTCGATACGATCTCTGCTAAAACAGCATCCCCCAATGCAGATAGCTTCTTTCAGACAAAAAGCCCATTTTTTGAGGATTCTGTCCCTCCCACTCCTCTCTCTAGATTCGGCAACTCCTCTTCCCCTCGTTATAGTGATGTGGGGGATCACTTCTTTGACAATTCCTCCAGGTTTGATTCTTTCAGCATGCAGGATCCCAGTTTTTCTCCACAACGCGAGAAGTTCTCCAGGTTCGATTCAATAGGCAGTTCTCAAGACTTTGGCCGTAACCAGGAGAAGTTTTCAAGGTTTGATTCTATCAGTAGTAGCATGGACTTCGGCCAGAGCAGCCAGCGGCACGCCAGGTTTGACTCCGCTGGCAGCTCTAGAGATTTCAGCCACAGTGCCTTCTCTTTTGATGATGCTGACCCATTTGGGTCCTCTGCCCCGTTTAAGGCCCCATCAGAGAATCAAAGTCCCAACAAAAGTTCTGATAGTTGGAGAGCTTTCTAA 3858 45.85 MEWANQQQQNNQSEQQLQVQMQVEQLSNGDGVGGLYVKVMTDEQMELLRHQISVYASICEQLVEMHKAITAHQDLAGIRVGNLYCDQIMASAAGHKISARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKEITLHLTQHGQISEANVYNWFQNRRARSKRKQANSTPNNPDSEPDTEVDSPKDKKTKPEETFQTYDQFVSNSNNVYSQTSDLGAEMLAFDAQSNKGDPMFQSFGSSHLSQVATAQNHTGANMDQFDAFFRRADLDGDGRISGAEAVAFFQGSNLSKNVLAQIWMHADQRKTGFLGRPEFYNALRLVTVAQSKRELTPDIVKAALYGPAAAKIPPPKIVLPAVSTPQSTSVPAASPPQMSMPAPTASQNFGFRGQGVPSVGVNQQHISAQPNPSMRLPQATPGGVASSTQLVVAAAEHSGGGHVRSSSLPNTNDWLGGRPGGALAAGPRGVSPSVPSPATSLSSALVPSQPMPNDRALAVSGNGFTSKSAIGADMFSITPSPHRPDSTGLNNTANSSIGPSAIVPVSSVSQPLSQHKSMESLQSAFVSRPLSGAPLQLSQSPLQLSQSPLQLSQSSLEPTKEVRATGPSPLISSGITTGARNSTSEHAQVSWPKMKPTDVQKYTKVFMEVDTDRDGKITEVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAALPNNVMFDETLLSMTGQPNVVHPNAAWGPHPGFGQQQPQVAARSMAPTAGLRPPTNVPASKAGGARLSNAQKSRTPVGETDNVILDSREKIEFYRTMMQELVLHKSRCDSRLNEITERASADRREAETLGKKYEEKYKQVADIASKLTIEEANYRDVQVKIHILKLYFDIERKTELHEAIIKMEQGGSADGILQVRADRIQSDIELLLKALTERCKRHGIDVKSAAMIELPVGTSLTLASDLYFCIFYLDSFCMCLHLLTERWQPGIADDAAVWDEEWDKFEDEGFSNDLNLDPKRVSASKPKMSRSLDEKDLEDFNSTPDSSFNGHDKTKVGIFSSTINHGLESEFMYSHSEDESARSPYGSPAAKTSLESPREFSDPVYEKSPEAYRSFDESAWGAFDNNDDVDSVWGIKPVNTKESDAEKHRDIFGSGDFDTISAKTASPNADSFFQTKSPFFEDSVPPTPLSRFGNSSSPRYSDVGDHFFDNSSRFDSFSMQDPSFSPQREKFSRFDSIGSSQDFGRNQEKFSRFDSISSSMDFGQSSQRHARFDSAGSSRDFSHSAFSFDDADPFGSSAPFKAPSENQSPNKSSDSWRAF 1285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14469978 14479374 + CmoCh01G020790.1 Cmo01g02079 375562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02079 1285 Gene3D - 102 167 - -
Cmo01g02079 1285 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 950 1212 - -
Cmo01g02079 1285 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1213 1285 - -
Cmo01g02079 1285 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 249 767 - -
Cmo01g02079 1285 CDD EH 255 321 IPR000261 GO:0005515
Cmo01g02079 1285 SUPERFAMILY EF-hand 617 696 IPR011992 -
Cmo01g02079 1285 Gene3D - 246 347 - -
Cmo01g02079 1285 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 767 923 - -
Cmo01g02079 1285 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 155 188 - -
Cmo01g02079 1285 SMART HOX_1 98 165 IPR001356 GO:0003677
Cmo01g02079 1285 Pfam EF hand 256 272 IPR002048 GO:0005509
Cmo01g02079 1285 Pfam EF hand 634 648 IPR002048 GO:0005509
Cmo01g02079 1285 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 1143 1166 - -
Cmo01g02079 1285 ProSiteProfiles EF-hand calcium-binding domain profile. 646 681 IPR002048 GO:0005509
Cmo01g02079 1285 PANTHER EH DOMAIN 950 1212 - -
Cmo01g02079 1285 PANTHER EH DOMAIN 1213 1285 - -
Cmo01g02079 1285 PANTHER EH DOMAIN 249 767 - -
Cmo01g02079 1285 PANTHER EH DOMAIN 767 923 - -
Cmo01g02079 1285 SUPERFAMILY Homeodomain-like 99 162 IPR009057 -
Cmo01g02079 1285 Gene3D - 623 696 - -
Cmo01g02079 1285 SMART eh_3 621 701 IPR000261 GO:0005515
Cmo01g02079 1285 SMART eh_3 244 339 IPR000261 GO:0005515
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 568 622 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 463 479 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 599 620 - -
Cmo01g02079 1285 ProSiteProfiles EH domain profile. 649 696 IPR000261 GO:0005515
Cmo01g02079 1285 ProSiteProfiles EF-hand calcium-binding domain profile. 250 285 IPR002048 GO:0005509
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 446 479 - -
Cmo01g02079 1285 SUPERFAMILY EF-hand 250 334 IPR011992 -
Cmo01g02079 1285 SMART efh_1 254 282 IPR002048 GO:0005509
Cmo01g02079 1285 SMART efh_1 650 678 IPR002048 GO:0005509
Cmo01g02079 1285 SMART efh_1 288 316 IPR002048 GO:0005509
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 989 1007 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 1266 1285 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 1184 1246 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 568 591 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 719 768 - -
Cmo01g02079 1285 CDD homeodomain 100 162 IPR001356 GO:0003677
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 1040 1069 - -
Cmo01g02079 1285 ProSiteProfiles EH domain profile. 251 341 IPR000261 GO:0005515
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 982 1014 - -
Cmo01g02079 1285 MobiDBLite consensus disorder prediction 1262 1285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02079 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101204624 1506.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02079 Cmo09g00049 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02079 Cmo-Chr1:14469978 Cmo11g01788 Cmo-Chr11:12574035 0 dispersed
Cmo09g00049 Cmo-Chr9:208487 Cmo01g02079 Cmo-Chr1:14469978 4.85E-101 transposed
Cmo01g02079 Cmo-Chr1:14469978 Cmo16g01322 Cmo-Chr16:9380247 2.16E-77 wgd
Cmo01g02079 Cmo-Chr1:14469978 Cmo19g00819 Cmo-Chr19:8073698 0 wgd
Cmo01g02079 Cmo-Chr1:14469978 Cmo09g00045 Cmo-Chr9:182454 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g01029 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 56.5 3.0e-46 183.3
Cmo11g00316 CCT,ECH 1 140 Wox Gene Family AT3G18010 62.1 1.7e-38 157.5
Cmo06g00062 . 4 226 Wox Gene Family AT3G03660 54.3 3.1e-52 203.0
Cmo14g00462 . 14 243 Wox Gene Family AT3G03660 50.4 2.6e-43 173.3
Cmo16g01322 . 1 275 Wox Gene Family AT4G35550 51.0 7.8e-71 264.6
Cmo06g00143 . 31 268 Wox Gene Family AT4G35550 53.7 9.8e-66 247.7
Cmo01g02079 CST 1 162 Wox Gene Family AT4G35550 67.5 1.3e-54 210.7
Cmo06g00143 . 31 170 Wox Gene Family AT1G20700 55.9 5.9e-39 158.3
Cmo01g02079 CST 38 169 Wox Gene Family AT1G20700 58.5 1.0e-38 157.5
Cmo05g00169 CST 5 173 Wox Gene Family AT1G46480 59.9 1.9e-47 186.4
Cmo12g00505 CST 5 138 Wox Gene Family AT1G46480 62.8 1.7e-43 173.3
Cmo07g00209 CST 1 388 Wox Gene Family AT2G33880 50.5 9.2e-65 245.0
Cmo13g01029 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 56.5 3.0e-46 183.3
Cmo11g00316 CCT,ECH 1 140 Wox Gene Family AT3G18010 62.1 1.7e-38 157.5
Cmo05g00169 CST 5 173 Wox Gene Family AT1G46480 59.9 1.9e-47 186.4
Cmo12g00505 CST 5 138 Wox Gene Family AT1G46480 62.8 1.7e-43 173.3
Cmo07g00209 CST 1 388 Wox Gene Family AT2G33880 50.5 9.2e-65 245.0
Cmo06g00062 . 4 226 Wox Gene Family AT3G03660 54.3 3.1e-52 203.0
Cmo14g00462 . 14 243 Wox Gene Family AT3G03660 50.4 2.6e-43 173.3
Cmo16g01322 . 1 275 Wox Gene Family AT4G35550 51.0 7.8e-71 264.6
Cmo06g00143 . 31 268 Wox Gene Family AT4G35550 53.7 9.8e-66 247.7
Cmo01g02079 CST 1 162 Wox Gene Family AT4G35550 67.5 1.3e-54 210.7
Cmo06g00143 . 31 170 Wox Gene Family AT1G20700 55.9 5.9e-39 158.3
Cmo01g02079 CST 38 169 Wox Gene Family AT1G20700 58.5 1.0e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9169 PF00046 Homeodomain 6.50E-17 CL0123 Cmo TF