Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02083 ATGAGTTTCATTTGGCTTCTTTCATTGCTATCTCTTTATTGTGGTATATTCCCTGTTGGGCTTGGTAAGAACATCTTCTCAAGACCATCGGTTGTGAACATTGGAGCTATTTTTTCTTTTGATTCTACCATTGGAAAAGTTGCCAAGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCTACCATTCTTCCCACAACCAACCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTTTAGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGCAACCGTCGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAATTGCAACCGAGTTCCAAGTTCCTCTAGTCTCATTTTCAGCTACAGATCCTACTCTCTCCGCCCTTCAGTTTCCCTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCAGTTGCTGAGATTATTGAGTACTATGATTGGAAAGAGGTTATCGCTATATACGTCGATGATGATTATGGGTGGAATGGTATTGCAGCATTGGATGATAAGCTTTCTGAAAAACGTTGTAAAATCACATACAAGGTGGGTATTAGTCCCGAAACTGCGGTAAACCAAGTCCAAGTTATGGATCAACTTGTTAAGATTGCATTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCACTTTAGTCTTTTCAGTGGCTAAATCCCTTCAAATGATGGGCAATGGATATGTATGGATAGCAACTGATTGGCTTTCGTCTCTACTAGATAGTGTTGTTCCCCCACCTCCTGAGACCTTGGACTCGATGCAAGGAGTTCTTTCTTTACGCCAGCACACAGCAGAGTCAAATAAAAAGAAAGCTTTTGTTTCCAGGTGGAATAAGTTAACTGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTCTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATTGACAAATTTTTTAATCAAGGTGGGGTCATTACACATTCTAATGATTCCAGGCTGAATTTCAATGGAAACGGTGATCTTCATCTTGAAGCTATGACTATCTTCGATGGTGGAAATCATCTGCTGAATAACATATTGGAGAGTGACCTTGTTGGTTTGACGGGTGCCCTTAAGTTCGATTCTGGTAGATCCCTTGTTCATCCTGCATATGATATTATTAACGTTATCGGGACTGGGTCAAGAAGGGTTGGCTACTGGTCTAACTATTCTGGTCTATCAATTGAAGCTCCTGAGATACTCTATTCCAAACCACCTAACCGTTCACACGCAAATCAGAAGCTGTACGAGGTTATATGGCCAGGAAATACAGTGGAAAAGCCTCGAGGATGGGTGTTCCCAAACAACGGGAAGCTACTAAACATTGGAGTGCCACTTCGGGCCAGTTTCAAGGAGTTTGTATCACAAATCAAAGGGTCCGACAATTTCCAAGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAAGCTTGTTACCTTACGCTGTCCCGCACCAATTCATAGCCTTTGGCAATGGCCATGAGAATCCAAATTACACAGATCTTGTATATGGGATAACAACTGGCAAATTTGATGCGGTTGTTGGAGACATAGCCATTGTCACAAGCCGTACAAGGCTTGTGGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCACTCAAAAAACTCAACACTGGTGCTTGGGCTTTCTTGCATCCATTTTCTCCAGCCATGTGGATGGTTACTGCTGCTTTCTTCCTTTTTATCGGAATAGTTGTCTGGATTCTGGAGCATAGGACAAACGATGAATTCCGAGGCCCACCGAGAAGACAATGCATTACAATTTTATGGTTTAGCTTCTCAACTCTATTCTTTGCCCATAAGGAGAACACAGTTAGCACTCTCGGCCGCCTCGTGCTGATCATATGGCTGTTTGTGGTTTTGATTATAAATTCTAGCTACACTGCAAGCTTAACATCCATTCTCACGGTGCAGCAGCTATATTCTCCAATCACAGGAATAGAAACCTTGAGGGAAATTGATGAACCGATTGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATCTGAGTGAGGAGCTGAACGTGTCTAGATCTAGGCTTATTCCTCTTGGATCACCGGAAGAATATGCCAAGGCACTTGATCTTGGCCCTGGCAAGGAGGGAGGCGTTGCTGCTGTAGTTGATGAACTTCTATATGTAGAAAATTTCATCTCTAGAGAGTGTAAATTCAGAGTTGTTGGTCAAGAGTTTACCAAAAGCGGCTGGGGTTTCGCATTCCCAAGAGACTCTCCATTGGCTATAGACATGTCAACTGCCATTTTGCAGCTATCCGAGAACGGCGATCTGCAACGGATACATGACAAATGGGTTGTGAAAAGTGCTTGCATCTCAGACAATACAGACCTCAAATCAGACTCGCTTCAACTTAAGAGCTTCTGGGGTCTCTTTCTAATCTGTGGGACAGTGTGCTTCATTGCCCTTGCCATATACTGCTTTCAGATTATTCGTCAGCTATACCATTCTGATTCAAAAGAATCTGATCTGTCTAGCAGTAGTGGATCGCATCCGAACCGTCTTCGACGAATCATGTCGTTGTTTGATGAGAAGAAAGAACCAAGGCAAAGCAAACGAAGGAAAGTTGAGAAATCATCCGAAAATGATAAGAATGATGGTAATTTGGAGGTAAATCCTTGA 2751 42.78 MSFIWLLSLLSLYCGIFPVGLGKNIFSRPSVVNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPTTNLWLQMQNSNCSGFLGMVEVLQLMENATVAIIGPQSSVVAHISSQIATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIIEYYDWKEVIAIYVDDDYGWNGIAALDDKLSEKRCKITYKVGISPETAVNQVQVMDQLVKIALMESRVMVLHVNPKLGTLVFSVAKSLQMMGNGYVWIATDWLSSLLDSVVPPPPETLDSMQGVLSLRQHTAESNKKKAFVSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVITHSNDSRLNFNGNGDLHLEAMTIFDGGNHLLNNILESDLVGLTGALKFDSGRSLVHPAYDIINVIGTGSRRVGYWSNYSGLSIEAPEILYSKPPNRSHANQKLYEVIWPGNTVEKPRGWVFPNNGKLLNIGVPLRASFKEFVSQIKGSDNFQGFCIDVFTAAVSLLPYAVPHQFIAFGNGHENPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPLKKLNTGAWAFLHPFSPAMWMVTAAFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPITGIETLREIDEPIGFQVGSFAERYLSEELNVSRSRLIPLGSPEEYAKALDLGPGKEGGVAAVVDELLYVENFISRECKFRVVGQEFTKSGWGFAFPRDSPLAIDMSTAILQLSENGDLQRIHDKWVVKSACISDNTDLKSDSLQLKSFWGLFLICGTVCFIALAIYCFQIIRQLYHSDSKESDLSSSSGSHPNRLRRIMSLFDEKKEPRQSKRRKVEKSSENDKNDGNLEVNP 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14490476 14495176 + CmoCh01G020830.1 Cmo01g02083 375566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02083 916 CDD GluR_Plant 466 808 - -
Cmo01g02083 916 Gene3D - 474 577 - -
Cmo01g02083 916 MobiDBLite consensus disorder prediction 865 916 - -
Cmo01g02083 916 MobiDBLite consensus disorder prediction 880 908 - -
Cmo01g02083 916 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Cmo01g02083 916 SUPERFAMILY Periplasmic binding protein-like II 446 811 - -
Cmo01g02083 916 CDD PBP1_GABAb_receptor_plant 33 422 IPR044440 -
Cmo01g02083 916 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 914 - -
Cmo01g02083 916 Gene3D - 578 715 - -
Cmo01g02083 916 Gene3D - 740 774 - -
Cmo01g02083 916 Gene3D - 147 421 - -
Cmo01g02083 916 Pfam Receptor family ligand binding region 50 406 IPR001828 -
Cmo01g02083 916 SMART GluR_14 469 811 IPR001320 GO:0015276|GO:0016020
Cmo01g02083 916 Pfam Bacterial extracellular solute-binding proteins, family 3 488 809 IPR001638 -
Cmo01g02083 916 Pfam Ligand-gated ion channel 810 840 IPR001320 GO:0015276|GO:0016020
Cmo01g02083 916 Gene3D - 775 808 - -
Cmo01g02083 916 PANTHER GLUTAMATE RECEPTOR 3.3 12 914 - -
Cmo01g02083 916 PIRSF IGluLR_plant 1 915 IPR017103 -
Cmo01g02083 916 Gene3D - 50 396 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02083 Cmo09g00038 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02083 Cmo-Chr1:14490476 Cmo03g00649 Cmo-Chr3:5886528 0 dispersed
Cmo01g02083 Cmo-Chr1:14490476 Cmo19g00823 Cmo-Chr19:8110181 0 wgd
Cmo01g02083 Cmo-Chr1:14490476 Cmo07g00376 Cmo-Chr7:1726781 0 wgd
Cmo01g02083 Cmo-Chr1:14490476 Cmo09g00038 Cmo-Chr9:167186 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02083 K05387 - csv:101204862 1602.03