Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02098 ATGACGGGATCTGAGACCGGAGTGATGACCAGCGGCGAACCCTTCACCATCGGTTTCCAGAAGAGTCCAGTACAGTCACAACAGTCGGTCTTGCCTGGCTTGCATTTGCCCTTCGGCGCCGACGGCGTCTACAAGCCCGCCTCCTCCGTCTCGCCCACCTACCAGTCCCCCCGCGTCGGAGTTTCCGGTAATGCCGGTGCCGATGTTTCTCCTCGTGAAGCTTTCGTTGACATGAATACGCAAAGCGAGCCTGTCAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGGGCCAGATGGCAGTATGGCAGTGACTTCTGCAGACCCGTCCGCCGCCGCAACTCAGTCCGGTGGAGGTTTTTCTCCTCCACCCACTGGCGTGACTCCGTCGGGAGGATCTGCCTCTCCAACTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTGGCAAAAAGCAGCAGCTGGATGCCTTGGGATCAGCCGGAGTTGGATTTACCCCACATGTCATCACCGTGAAAGCTGGAGAGGACGTGTCTTCAAAAATAATGTCAATCTCACAGAATGGTCCTAGAGCTGTTTGTATTCTTTCAGCAAATGGAGCTATATCCAACGTGACTCTACGTCAACCAGCCATGTCCGGTGGAACCGTGACTTATGAGGGGCGATTTGAGATTTTGTCACTATCTGGGTTATATCTTCTCACCGAGAATGGTGGTCAGCGTAGCCGAACTGGGGGTTTAAGTGTTTCATTGTCTGGACCAGATGGTAGAGTTTTGGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCCTCTCCTGTTCAGGTGGTGGTGGGGAGCTTTGTGAACGATGGGGGGCACAAGGAATTGAAACAAGCAAACCAAATAGAACAGCGGCCTGTTACCGCACCACATAAACTCGCTCCGATCCGTGCTGGAATGGCAGGGGCGAGCAGTCCGCAATCACGTGGGGCTCTCAGTGAATCCTCAGGAGGGCAAGGGAGCCCGTTTAATCAGAGTGGTGGAGCCTGCAATAACACCGCATCTTGGAAGTGA 1047 54.82 MTGSETGVMTSGEPFTIGFQKSPVQSQQSVLPGLHLPFGADGVYKPASSVSPTYQSPRVGVSGNAGADVSPREAFVDMNTQSEPVKRKRGRPRKYGPDGSMAVTSADPSAAATQSGGGFSPPPTGVTPSGGSASPTLKKARGRPPGSGKKQQLDALGSAGVGFTPHVITVKAGEDVSSKIMSISQNGPRAVCILSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGLYLLTENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVNDGGHKELKQANQIEQRPVTAPHKLAPIRAGMAGASSPQSRGALSESSGGQGSPFNQSGGACNNTASWK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14534772 14537474 - CmoCh01G020980.1 Cmo01g02098 375581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02098 348 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 280 IPR005175 -
Cmo01g02098 348 MobiDBLite consensus disorder prediction 317 348 - -
Cmo01g02098 348 ProSiteProfiles PPC domain profile profile. 159 299 IPR005175 -
Cmo01g02098 348 MobiDBLite consensus disorder prediction 311 348 - -
Cmo01g02098 348 Gene3D - 165 297 - -
Cmo01g02098 348 SUPERFAMILY AF0104/ALDC/Ptd012-like 163 289 - -
Cmo01g02098 348 MobiDBLite consensus disorder prediction 1 28 - -
Cmo01g02098 348 MobiDBLite consensus disorder prediction 106 134 - -
Cmo01g02098 348 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Cmo01g02098 348 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Cmo01g02098 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 344 IPR039605 GO:0003680
Cmo01g02098 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 15 344 - -
Cmo01g02098 348 MobiDBLite consensus disorder prediction 44 153 - -
Cmo01g02098 348 CDD DUF296 164 278 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02098 Cmo05g00982 CCT
Cmo01g02098 Cmo12g00629 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02098 Cmo-Chr1:14534772 Cmo06g00662 Cmo-Chr6:3334907 3.94E-71 dispersed
Cmo05g01256 Cmo-Chr5:9755157 Cmo01g02098 Cmo-Chr1:14534772 3.15E-49 dispersed
Cmo15g01287 Cmo-Chr15:8807628 Cmo01g02098 Cmo-Chr1:14534772 3.39E-58 dispersed
Cmo18g01215 Cmo-Chr18:12076006 Cmo01g02098 Cmo-Chr1:14534772 2.45E-57 dispersed
Cmo19g00256 Cmo-Chr19:1864916 Cmo01g02098 Cmo-Chr1:14534772 1.03E-58 dispersed
Cmo01g02098 Cmo-Chr1:14534772 Cmo12g00629 Cmo-Chr12:3929478 3.74E-105 wgd
Cmo01g02098 Cmo-Chr1:14534772 Cmo05g00982 Cmo-Chr5:7907590 2.00E-107 wgd
Cmo01g02098 Cmo-Chr1:14534772 Cmo09g00025 Cmo-Chr9:132209 4.53E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02098 - - csv:101207513 508.449