Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02100 ATGGAGAAGGGGCCGACCACTGTTTCAGCCATGGAGGCTTTCGAGAAGCTAGAGAAGGTCGGAGAAGGAACTTATGGCAAAGTTTATAGGGCACGGGAGAAGGCCACCGGCAAGATTGTAGCGCTTAAGAAGACGCGCCTCCACGAGGACGAGGAAGGTGTTCCTCCCACTACTCTTAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCTCATATTGTTAGGTTGATGGATGTGAAACAAGGGCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATACATGGATACTGATCTGAAAAAATTCATCAAGAGTTTCCGTCATACGGGAGAAAGCATTCCCGTCAACACTGTCAAGAGTCTGATGTACCAACTCTGCAAGGGCGTTGCCTTCTGCCATGGTCATGGAATCCTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGAAAGACTATGATGCTCAAAATTGCAGACCTTGGACTCGCTCGAGCATTTACTTTGCCAATTAAGAAGTATACTCACGAGATACTGACCCTCTGGTATAGAGCTCCTGAAGTTCTGTTGGGAGCTACTCATTACTCCACTGCTGTAGATATGTGGTCTGTTGGCTGCATATTCGCCGAACTTGCCACGAAGCAGGCGCTCTTTCCTGGAGATTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGGACCCCAAATGAAAAAGTTTGGCCTGGTGTGAGCAAACTAATGAACTGGCACGAGTATCCCCAGTGGAACCCCCAAAGCCTTTCAACAGCTGTCCCCAACTTGGATGATAAAGCGCTAGATCTGCTTGCACAAATGTTGAAGTATGAACCCTCAAAGCGTATTTCAGCGAAGAGAGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGCATATCTCTGA 939 46.96 MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRHTGESIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWNPQSLSTAVPNLDDKALDLLAQMLKYEPSKRISAKRAMEHPYFDDLNKAYL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14539206 14541548 + CmoCh01G021000.1 Cmo01g02100 375583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02100 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Cmo01g02100 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Cmo01g02100 312 SMART serkin_6 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g02100 312 PANTHER - 7 310 - -
Cmo01g02100 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g02100 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Cmo01g02100 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g02100 312 PANTHER CELL DIVISION PROTEIN KINASE 7 310 - -
Cmo01g02100 312 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Cmo01g02100 312 Gene3D Transferase(Phosphotransferase) domain 1 102 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02100 Cmo-Chr1:14539206 Cmo04g01496 Cmo-Chr4:7659026 1.16E-119 dispersed
Cmo04g02106 Cmo-Chr4:13382655 Cmo01g02100 Cmo-Chr1:14539206 7.81E-13 dispersed
Cmo09g00026 Cmo-Chr9:132334 Cmo01g02100 Cmo-Chr1:14539206 1.05E-11 dispersed
Cmo01g02100 Cmo-Chr1:14539206 Cmo07g01231 Cmo-Chr7:6716325 5.42E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74076 PF00069 Pkinase 1.40E-72 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02100 K07760 - csv:101208001 619.772