Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02101 ATGGACGATACCGATAAGGCGGGGCAGGATTTGCTCCACGGCCCCGGCGCAGGTCTTGCTCAAAACCAAGTTCAAGTTCGGGAGCCAGGATTTGCAGTGACAAAGGAGGATCAGAACCTTAAAGAAGATGAGCAATCAGCCTGCCCAATGTTTAACGACGTTCAGTTTCACGAACTTCCTTGCCTTCAAAAACTGATTGAGGACGATGAGGATTTACCTGATCATACTGCCGTTGAAGCTGCTGCTGCTGCTGATGCAAAAGTTGTGGAGGTTGCTCTGGATGAACCGCTTGAAAGTAAAGAAGATGCCATGGAGACTGATCCTCCAATTGGGAACGAAGATAATCCTTCTGCACCTCCCATTTCACCTGACATCTCTCTGCCTTCAAATGCCGCAAATCAGAGTGCGGCACTCGTGAAGAATGCATGGATTGATATTGAAATGGCTGAGGGTGACGAATCGGGGACACCAGAGGATAGGGTGGAATTTATGAAGGAGATCGAAAATTTCCACCGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAACTGCCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTAGATATGCATTGCTTCATAATGATATTTTGGTTACGTTTCCAAATCTTGCATGTTCTTGGCATTTATCTCTTCAGTTATGTGCTTAATTTGTCTTTCCTCTTCGCTGGTTATCGTTGTAACATGCAGGCACTTTTAGAGTATGAAAAGCATAAAAGACTAACGGGGGAACTGCAACTACCTGTTGGAGCCCTTCCTCAGTCTACAAATACAGAAAAGGAGGTAGATTTTATTTCTCTATCCAGTAGACTGCTTTTCACTGGCTACTATCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTGGTTGGATATGGCGAGGATGCTGAGCCTATAGTAAAGGTCTGTGGAGAGTTGAATCATGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAAAATCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAACACAGACCACGTTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAACAGTTATGGATGTTGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGACTGCTTTGAAGTATATGCATTAGTTCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACGCCTTTTAAAAAGGTGGTGAGCTTACCCACAAGAATTGATCCTCTTCAGACATCTGCCGTGGTGAGCCTTCATGGCCGACTTTTTGTGCGAGCCCCTTTTGAGCAAGGATCCATGTGA 1458 46.02 MDDTDKAGQDLLHGPGAGLAQNQVQVREPGFAVTKEDQNLKEDEQSACPMFNDVQFHELPCLQKLIEDDEDLPDHTAVEAAAAADAKVVEVALDEPLESKEDAMETDPPIGNEDNPSAPPISPDISLPSNAANQSAALVKNAWIDIEMAEGDESGTPEDRVEFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVDMHCFIMIFWLRFQILHVLGIYLFSYVLNLSFLFAGYRCNMQALLEYEKHKRLTGELQLPVGALPQSTNTEKEVDFISLSSRLLFTGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEDAEPIVKVCGELNHDKNLGSTSKREKNLKNIGFPKHKMLTNTDHVGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLFVRAPFEQGSM 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14542120 14547272 + CmoCh01G021010.1 Cmo01g02101 375584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02101 485 CDD ARID 159 206 - -
Cmo01g02101 485 Pfam ARID/BRIGHT DNA binding domain 160 207 IPR001606 GO:0003677
Cmo01g02101 485 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 109 482 IPR045147 GO:0006357
Cmo01g02101 485 MobiDBLite consensus disorder prediction 96 127 - -
Cmo01g02101 485 SMART ARID_2 154 254 - -
Cmo01g02101 485 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 384 485 IPR002068 -
Cmo01g02101 485 Gene3D - 374 484 IPR008978 -
Cmo01g02101 485 SUPERFAMILY HSP20-like chaperones 392 480 IPR008978 -
Cmo01g02101 485 CDD ACD_sHsps-like 399 479 - -
Cmo01g02101 485 MobiDBLite consensus disorder prediction 1 24 - -
Cmo01g02101 485 ProSiteProfiles ARID domain profile. 157 258 IPR001606 GO:0003677
Cmo01g02101 485 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 109 482 - -
Cmo01g02101 485 Pfam Hsp20/alpha crystallin family 401 480 IPR002068 -
Cmo01g02101 485 SMART bright_3 158 242 IPR001606 GO:0003677
Cmo01g02101 485 Gene3D - 147 264 IPR036431 GO:0003677
Cmo01g02101 485 SUPERFAMILY ARID-like 153 259 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02101 - - - qsu:112029964 432.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02101 Cmo-Chr1:14542120 Cmo06g00165 Cmo-Chr6:869789 7.20E-89 dispersed
Cmo01g02101 Cmo-Chr1:14542120 Cmo16g01343 Cmo-Chr16:9472037 3.60E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g36 . . . . . . . . . . Cma01g02043 . Car01g01610 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01577 . . Bma01g00689 . . Cmo01g02101 . . . . . . Cpe02g00012 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00098 . 1 358 ARID Transcription Factor Family AT1G04880 56.5 7.3e-106 381.7
Cmo08g00997 . 45 384 ARID Transcription Factor Family AT1G04880 59.7 5.8e-103 372.1
Cmo06g00165 . 1576 1847 ARID Transcription Factor Family AT1G20910 59.7 1.0e-87 321.2
Cmo01g02101 . 144 452 ARID Transcription Factor Family AT1G20910 53.4 9.0e-76 281.6
Cmo09g00078 CST 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.2e-113 407.1
Cmo01g02054 CST 16 363 ARID Transcription Factor Family AT1G76110 58.4 2.5e-106 382.9
Cmo06g00165 . 1567 1876 ARID Transcription Factor Family AT1G76510 60.3 1.9e-103 373.6
Cmo01g02101 . 143 482 ARID Transcription Factor Family AT1G76510 58.8 1.5e-95 347.4
Cmo01g00019 CCT,ECH 1 771 ARID Transcription Factor Family AT3G43240 59.1 6.0e-262 901.0
Cmo14g01244 . 1 781 ARID Transcription Factor Family AT3G43240 58.2 3.6e-259 891.7
Cmo17g00636 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.6 5.1e-253 871.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9171 PF00011 HSP20 0.00017 CL0190 Cmo TR