Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02101 ATGGACGATACCGATAAGGCGGGGCAGGATTTGCTCCACGGCCCCGGCGCAGGTCTTGCTCAAAACCAAGTTCAAGTTCGGGAGCCAGGATTTGCAGTGACAAAGGAGGATCAGAACCTTAAAGAAGATGAGCAATCAGCCTGCCCAATGTTTAACGACGTTCAGTTTCACGAACTTCCTTGCCTTCAAAAACTGATTGAGGACGATGAGGATTTACCTGATCATACTGCCGTTGAAGCTGCTGCTGCTGCTGATGCAAAAGTTGTGGAGGTTGCTCTGGATGAACCGCTTGAAAGTAAAGAAGATGCCATGGAGACTGATCCTCCAATTGGGAACGAAGATAATCCTTCTGCACCTCCCATTTCACCTGACATCTCTCTGCCTTCAAATGCCGCAAATCAGAGTGCGGCACTCGTGAAGAATGCATGGATTGATATTGAAATGGCTGAGGGTGACGAATCGGGGACACCAGAGGATAGGGTGGAATTTATGAAGGAGATCGAAAATTTCCACCGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAACTGCCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTAGATATGCATTGCTTCATAATGATATTTTGGTTACGTTTCCAAATCTTGCATGTTCTTGGCATTTATCTCTTCAGTTATGTGCTTAATTTGTCTTTCCTCTTCGCTGGTTATCGTTGTAACATGCAGGCACTTTTAGAGTATGAAAAGCATAAAAGACTAACGGGGGAACTGCAACTACCTGTTGGAGCCCTTCCTCAGTCTACAAATACAGAAAAGGAGGTAGATTTTATTTCTCTATCCAGTAGACTGCTTTTCACTGGCTACTATCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTGGTTGGATATGGCGAGGATGCTGAGCCTATAGTAAAGGTCTGTGGAGAGTTGAATCATGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAAAATCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAACACAGACCACGTTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAACAGTTATGGATGTTGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGACTGCTTTGAAGTATATGCATTAGTTCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACGCCTTTTAAAAAGGTGGTGAGCTTACCCACAAGAATTGATCCTCTTCAGACATCTGCCGTGGTGAGCCTTCATGGCCGACTTTTTGTGCGAGCCCCTTTTGAGCAAGGATCCATGTGA 1458 46.02 MDDTDKAGQDLLHGPGAGLAQNQVQVREPGFAVTKEDQNLKEDEQSACPMFNDVQFHELPCLQKLIEDDEDLPDHTAVEAAAAADAKVVEVALDEPLESKEDAMETDPPIGNEDNPSAPPISPDISLPSNAANQSAALVKNAWIDIEMAEGDESGTPEDRVEFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVDMHCFIMIFWLRFQILHVLGIYLFSYVLNLSFLFAGYRCNMQALLEYEKHKRLTGELQLPVGALPQSTNTEKEVDFISLSSRLLFTGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEDAEPIVKVCGELNHDKNLGSTSKREKNLKNIGFPKHKMLTNTDHVGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLFVRAPFEQGSM 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14542120 14547272 + CmoCh01G021010.1 Cmo01g02101 375584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02101 485 CDD ARID 159 206 - -
Cmo01g02101 485 Pfam ARID/BRIGHT DNA binding domain 160 207 IPR001606 GO:0003677
Cmo01g02101 485 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 109 482 IPR045147 GO:0006357
Cmo01g02101 485 MobiDBLite consensus disorder prediction 96 127 - -
Cmo01g02101 485 SMART ARID_2 154 254 - -
Cmo01g02101 485 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 384 485 IPR002068 -
Cmo01g02101 485 Gene3D - 374 484 IPR008978 -
Cmo01g02101 485 SUPERFAMILY HSP20-like chaperones 392 480 IPR008978 -
Cmo01g02101 485 CDD ACD_sHsps-like 399 479 - -
Cmo01g02101 485 MobiDBLite consensus disorder prediction 1 24 - -
Cmo01g02101 485 ProSiteProfiles ARID domain profile. 157 258 IPR001606 GO:0003677
Cmo01g02101 485 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 109 482 - -
Cmo01g02101 485 Pfam Hsp20/alpha crystallin family 401 480 IPR002068 -
Cmo01g02101 485 SMART bright_3 158 242 IPR001606 GO:0003677
Cmo01g02101 485 Gene3D - 147 264 IPR036431 GO:0003677
Cmo01g02101 485 SUPERFAMILY ARID-like 153 259 IPR036431 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02101 Cmo-Chr1:14542120 Cmo06g00165 Cmo-Chr6:869789 7.20E-89 dispersed
Cmo01g02101 Cmo-Chr1:14542120 Cmo16g01343 Cmo-Chr16:9472037 3.60E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9171 PF00011 HSP20 0.00017 CL0190 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02101 - - qsu:112029964 432.565