Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g02101 | ATGGACGATACCGATAAGGCGGGGCAGGATTTGCTCCACGGCCCCGGCGCAGGTCTTGCTCAAAACCAAGTTCAAGTTCGGGAGCCAGGATTTGCAGTGACAAAGGAGGATCAGAACCTTAAAGAAGATGAGCAATCAGCCTGCCCAATGTTTAACGACGTTCAGTTTCACGAACTTCCTTGCCTTCAAAAACTGATTGAGGACGATGAGGATTTACCTGATCATACTGCCGTTGAAGCTGCTGCTGCTGCTGATGCAAAAGTTGTGGAGGTTGCTCTGGATGAACCGCTTGAAAGTAAAGAAGATGCCATGGAGACTGATCCTCCAATTGGGAACGAAGATAATCCTTCTGCACCTCCCATTTCACCTGACATCTCTCTGCCTTCAAATGCCGCAAATCAGAGTGCGGCACTCGTGAAGAATGCATGGATTGATATTGAAATGGCTGAGGGTGACGAATCGGGGACACCAGAGGATAGGGTGGAATTTATGAAGGAGATCGAAAATTTCCACCGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAACTGCCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTAGATATGCATTGCTTCATAATGATATTTTGGTTACGTTTCCAAATCTTGCATGTTCTTGGCATTTATCTCTTCAGTTATGTGCTTAATTTGTCTTTCCTCTTCGCTGGTTATCGTTGTAACATGCAGGCACTTTTAGAGTATGAAAAGCATAAAAGACTAACGGGGGAACTGCAACTACCTGTTGGAGCCCTTCCTCAGTCTACAAATACAGAAAAGGAGGTAGATTTTATTTCTCTATCCAGTAGACTGCTTTTCACTGGCTACTATCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTGGTTGGATATGGCGAGGATGCTGAGCCTATAGTAAAGGTCTGTGGAGAGTTGAATCATGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAAAATCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAACACAGACCACGTTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAACAGTTATGGATGTTGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGACTGCTTTGAAGTATATGCATTAGTTCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACGCCTTTTAAAAAGGTGGTGAGCTTACCCACAAGAATTGATCCTCTTCAGACATCTGCCGTGGTGAGCCTTCATGGCCGACTTTTTGTGCGAGCCCCTTTTGAGCAAGGATCCATGTGA | 1458 | 46.02 | MDDTDKAGQDLLHGPGAGLAQNQVQVREPGFAVTKEDQNLKEDEQSACPMFNDVQFHELPCLQKLIEDDEDLPDHTAVEAAAAADAKVVEVALDEPLESKEDAMETDPPIGNEDNPSAPPISPDISLPSNAANQSAALVKNAWIDIEMAEGDESGTPEDRVEFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVDMHCFIMIFWLRFQILHVLGIYLFSYVLNLSFLFAGYRCNMQALLEYEKHKRLTGELQLPVGALPQSTNTEKEVDFISLSSRLLFTGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEDAEPIVKVCGELNHDKNLGSTSKREKNLKNIGFPKHKMLTNTDHVGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLFVRAPFEQGSM | 485 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14542120 | 14547272 | + | CmoCh01G021010.1 | Cmo01g02101 | 375584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g02101 | 485 | CDD | ARID | 159 | 206 | - | - | |
Cmo01g02101 | 485 | Pfam | ARID/BRIGHT DNA binding domain | 160 | 207 | IPR001606 | GO:0003677 | |
Cmo01g02101 | 485 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 109 | 482 | IPR045147 | GO:0006357 | |
Cmo01g02101 | 485 | MobiDBLite | consensus disorder prediction | 96 | 127 | - | - | |
Cmo01g02101 | 485 | SMART | ARID_2 | 154 | 254 | - | - | |
Cmo01g02101 | 485 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 384 | 485 | IPR002068 | - | |
Cmo01g02101 | 485 | Gene3D | - | 374 | 484 | IPR008978 | - | |
Cmo01g02101 | 485 | SUPERFAMILY | HSP20-like chaperones | 392 | 480 | IPR008978 | - | |
Cmo01g02101 | 485 | CDD | ACD_sHsps-like | 399 | 479 | - | - | |
Cmo01g02101 | 485 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmo01g02101 | 485 | ProSiteProfiles | ARID domain profile. | 157 | 258 | IPR001606 | GO:0003677 | |
Cmo01g02101 | 485 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 | 109 | 482 | - | - | |
Cmo01g02101 | 485 | Pfam | Hsp20/alpha crystallin family | 401 | 480 | IPR002068 | - | |
Cmo01g02101 | 485 | SMART | bright_3 | 158 | 242 | IPR001606 | GO:0003677 | |
Cmo01g02101 | 485 | Gene3D | - | 147 | 264 | IPR036431 | GO:0003677 | |
Cmo01g02101 | 485 | SUPERFAMILY | ARID-like | 153 | 259 | IPR036431 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g02101 | Cmo-Chr1:14542120 | Cmo06g00165 | Cmo-Chr6:869789 | 7.20E-89 | dispersed | |
Cmo01g02101 | Cmo-Chr1:14542120 | Cmo16g01343 | Cmo-Chr16:9472037 | 3.60E-104 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9171 | PF00011 | HSP20 | 0.00017 | CL0190 | Cmo | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g02101 | - | - | qsu:112029964 | 432.565 |