Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02108 ATGGACGACCTCGGCGCCCAAGTTGTTCCTCCTGTTTTCATCCACCAAACCTTCCCCACTCACTACACTGGTTTTCCTTCCACCTCCAACAAGCGCCCTTTATCTTATCACAATCACCTCCACCACCACTCCCATACTTGGAACCCTAAGACTTGGGATTGGGATACCGATACGTTCCTCATCAAACCCTCCGACCCTGCGCTACTCCACTCCGATGCTCTCTCATCCAAACCCCACTTCCTTCCTGCTACTCCTCTTCCTTCCACCTCAAACAACAACACTCTCCACCTCCAGGATGATCAGACTCTTCGCCTTAATCTTGGTCCTGCTCCCAATTTCAATTGCGTTGAGCAGCCGCTCTCCAAACCCCCCAAAAAGCTCCGCCCTGACCCTGGATCTCCCGCCACTGCCACCTACCCTATGTGTCAGGTCGATAATTGTAAGGAAGATCTCTCTAATGCCAAAGACTATCACCGCAGACATAAAGTTTGCCAGCTCCATAGCAAATCCACCAAAGCCCTAGTTGCTAATCTGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCATCCACTTTCGGAATTTGATGATGGGAAAAGAAGCTGTAGAAGGAGACTTGCGGGGCACAACTGGCGTAGAAGGAAGACGCAGCCCGAGGATGTAACCTCAAGGCTGACCCCGGCAGGAAGTAGAGGACCCCCAAGCGGTGGGAATTTAGACATCTTCAGTCTATTGGCTGTTCTAGCTCAGGCTCAAGGAAATAACGAAGGCCAGAGTGTAGAAAGCTTGCTGTCAGCTAATAGTGACCAACTCATTCAGACCCTCACTAAGGTCAATTCACTTCCTTTACCAGCAGAGTTTGCAGCAAAGGTGCCCAATTTAGAGAATTTTATGGGGAAGGCTTCTCCAGGAAGTTCTTTGCAGCACCAAAACAAATTAAATAGAAATCCATCTTCTTCTTCGACCATGGACTTGCTCACTGTACTTTCAGCAACTTTAGTGGCATCAGCTCCAGATGCTCTGGCAATGCTGTCGCAGAAGAGCAGTCCGAGTAGTGCTAGCGAAAAAACAAGGTCGTCGTGCCCCTCTGGTTCTGATCTCCAGAATAGGCCTCTGGAATTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCGTGGACGAATCGGATGGACAAGTTCAAGGATCTCGAGTTGGTTTGCCACTTCAGCTGTTTAGCTCTTCGCCTGAACATGATACCCCACTGAACTTGACGGCTTCTAGAAAGTACTTTTCTTCTGATAGCAGTAATCCTATTGATGAGAGGTCTCCATCATCCTCACCTCCTCTCCTTCAGAAGTTGTTTCCCGTGCAAAGATCAGAAGAAACTACCAGTAATAGGAAAATACCAATCAGAAAAGAAGTTAGTGGAATTGTTGAGGTCCCAAAGCCTCCTAGTAGCGCCATGCCCTTTGAACTCTTTAGAGAGTCAGATAGAGGAGGCGGCCCAAATTTGCTTCATACTGTTCCTTATCAGGCTGGATATACTTCTTCGGGGTCTGATCATTCACCTTCTAATTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAACTCTTCGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCATCTGAAATGGAAAGCTACATACGGCCTGGTTGTGTGGTTCTATCGATTTATATGTCTATGTCATCCATTGCATGGGAACAGCTTGAAGAAAATTTGGTTTTGCATGTTAAATCTTTGGTTCATGGCGAAAATCTTGAATTTTGGAGAAGTGGAAGATTTTTAGTCTACTCTGGGAGGCAACTAGCGTCGCACAAGGATGGTGAGAACTTACCAGGCGTAGTCCTTGAAGCCATAGGCTGTAGATTTGTTGTTGTTCTTGTGTTAAATTTTGTTTCCATTGATTTGATTGGATATTCAGGGAAGATTCGTCTGAACAAATCCTCAAAAGCATGGAGTAACCCGGAGTTAATCTCGGTGTCACCTTTGGCTGTTGTGAGTGGACAAAAGACTTCCTTTCTATTACGGGGAACGAATTTGAAAAATCCTTGCACCAAGATTCATTGCACATTTATGGGTGGCTACATATCCAAAGAAGTAATGGGATTAAGTAGGCAGGGAACATACGATGAGATACACTCTGGAAATTACAAAATTGGGGATGCATCATCACCTTCCACTCTTGGTCGTTGTTTCATTGAGTTTTTTTGGTTTGAACTAGCATGTGTTATCTTCTTCGCCACAGTTAAAGTTTCTTACAAGGTGGAAAATGGTTTTAGAGGAAATAGTTTCCCCGTTATTATAGCTGATTCTGCCATCTGTAAGGAATTGAGGCATCTTGAGTCCGTGTTTGATGAGTTTAGAGTTACTGATATGAGTTCAGAAAGCCATTCATGTGTTCCTTCGCAGCCGAGGCTAAAGGATGAAACTTTGCAGTTCTTAAATGAACTTGGATGGCTATTCCAAAGGGAAAGGTCGTCTTCCAAGCTAGATAATCCAATTTTTCTAATCAGGCGGTTCAAATATTTACTCACGTTCTCAGTAGAGAGGGACTTCTGTGCGCTACTTAAAACACTTCTTGACATTCTGGTAAAAAAATGCTTGATCACAAATGGACTATCAATGAAGTCCTTGGAAATGATATCTGAGGTTCAGCTTTTGAACCGGGCAGTGAAAAGGAGGTGCAGGCCGATGGTTGATTTACTCGTCCATTATTATGTATCTGGCTTCGGTGATGAAGAGAAAAAGTACCTCTTTCCACCAAATGTTATTGGTCCTGGTCGTATTACGCCTATGCATTTGGCAGCTTCAATGGAAGATTCAGATGATATGGTTGATGCTCTGACAAATGACCCGCTGGAGAGCGCTCTGATAGTTGTCCACCGTGGTGATGAAGGATTATATTGTCTACTTTGTTGTCTGAAAGCTCTCAAAACCCTTCCTAGGTGTACTTCCCAAAATGGTTCCGAAATTGGATTGAATTGCTGGAGTTCCCAAGTAGATGCAAGCGGACAGTCAGCACGGGGTTATGCGTTGATGAGGGGAAATCACTCTTGTAACGAGCTGGTGGATCGAAAACTTGAGGACAGAAAGAAGGGTCAAGTTTCAGTGAGAGTTGGGAATGAGATAGAGGAAGTAGGGGTGTCAAGTAGTGAGCGGAGCAGGGTGCAAGGAAGATGTTGCTCTAGGTGTGCAGTTGTTGCAGGAAGGTGCTACAAGAGGGTTCCTGGGAGTGGGACACACCGGTTGCTTCATCGGCCCTATATCCATTCAATGCTTGCTATAGGTGCTGTGTGTGTTTGCGTGTGCCTATTCTTGCGGGGTTCCCCAGACATTGGCTTAGTAGCACCCTTCAAATGGGAGAACTTGAGGTATGGGACAATTTAG 3453 45.35 MDDLGAQVVPPVFIHQTFPTHYTGFPSTSNKRPLSYHNHLHHHSHTWNPKTWDWDTDTFLIKPSDPALLHSDALSSKPHFLPATPLPSTSNNNTLHLQDDQTLRLNLGPAPNFNCVEQPLSKPPKKLRPDPGSPATATYPMCQVDNCKEDLSNAKDYHRRHKVCQLHSKSTKALVANLMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTPAGSRGPPSGGNLDIFSLLAVLAQAQGNNEGQSVESLLSANSDQLIQTLTKVNSLPLPAEFAAKVPNLENFMGKASPGSSLQHQNKLNRNPSSSSTMDLLTVLSATLVASAPDALAMLSQKSSPSSASEKTRSSCPSGSDLQNRPLEFPSVGGERSSTSYQSPVDESDGQVQGSRVGLPLQLFSSSPEHDTPLNLTASRKYFSSDSSNPIDERSPSSSPPLLQKLFPVQRSEETTSNRKIPIRKEVSGIVEVPKPPSSAMPFELFRESDRGGGPNLLHTVPYQAGYTSSGSDHSPSNLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSIYMSMSSIAWEQLEENLVLHVKSLVHGENLEFWRSGRFLVYSGRQLASHKDGENLPGVVLEAIGCRFVVVLVLNFVSIDLIGYSGKIRLNKSSKAWSNPELISVSPLAVVSGQKTSFLLRGTNLKNPCTKIHCTFMGGYISKEVMGLSRQGTYDEIHSGNYKIGDASSPSTLGRCFIEFFWFELACVIFFATVKVSYKVENGFRGNSFPVIIADSAICKELRHLESVFDEFRVTDMSSESHSCVPSQPRLKDETLQFLNELGWLFQRERSSSKLDNPIFLIRRFKYLLTFSVERDFCALLKTLLDILVKKCLITNGLSMKSLEMISEVQLLNRAVKRRCRPMVDLLVHYYVSGFGDEEKKYLFPPNVIGPGRITPMHLAASMEDSDDMVDALTNDPLESALIVVHRGDEGLYCLLCCLKALKTLPRCTSQNGSEIGLNCWSSQVDASGQSARGYALMRGNHSCNELVDRKLEDRKKGQVSVRVGNEIEEVGVSSSERSRVQGRCCSRCAVVAGRCYKRVPGSGTHRLLHRPYIHSMLAIGAVCVCVCLFLRGSPDIGLVAPFKWENLRYGTI 1150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14584798 14590701 + CmoCh01G021080.1 Cmo01g02108 375591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02108 1150 MobiDBLite consensus disorder prediction 210 234 - -
Cmo01g02108 1150 MobiDBLite consensus disorder prediction 345 398 - -
Cmo01g02108 1150 Pfam SBP domain 142 215 IPR004333 GO:0003677
Cmo01g02108 1150 MobiDBLite consensus disorder prediction 508 528 - -
Cmo01g02108 1150 MobiDBLite consensus disorder prediction 345 370 - -
Cmo01g02108 1150 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 662 978 - -
Cmo01g02108 1150 MobiDBLite consensus disorder prediction 428 463 - -
Cmo01g02108 1150 SUPERFAMILY SBT domain 140 220 IPR036893 GO:0003677|GO:0005634
Cmo01g02108 1150 MobiDBLite consensus disorder prediction 428 461 - -
Cmo01g02108 1150 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 32 631 - -
Cmo01g02108 1150 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 1009 1150 - -
Cmo01g02108 1150 MobiDBLite consensus disorder prediction 378 395 - -
Cmo01g02108 1150 MobiDBLite consensus disorder prediction 299 320 - -
Cmo01g02108 1150 Gene3D - 133 203 IPR036893 GO:0003677|GO:0005634
Cmo01g02108 1150 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 662 978 IPR044817 GO:0003677
Cmo01g02108 1150 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 631 IPR044817 GO:0003677
Cmo01g02108 1150 MobiDBLite consensus disorder prediction 118 137 - -
Cmo01g02108 1150 ProSiteProfiles Zinc finger SBP-type profile. 139 216 IPR004333 GO:0003677
Cmo01g02108 1150 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1009 1150 IPR044817 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02108 - - - cmax:111474399 1590.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02108 Cmo09g00010 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00273 Cmo-Chr1:1270820 Cmo01g02108 Cmo-Chr1:14584798 3.77E-39 dispersed
Cmo01g02108 Cmo-Chr1:14584798 Cmo14g00981 Cmo-Chr14:5243293 5.00E-34 dispersed
Cmo14g01695 Cmo-Chr14:13325908 Cmo01g02108 Cmo-Chr1:14584798 2.12E-19 dispersed
Cmo01g02108 Cmo-Chr1:14584798 Cmo09g00010 Cmo-Chr9:64679 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9172 PF03110 SBP 3.80E-29 No_clan Cmo TF