Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00023 | ATGAAGGAGAGTGGACGGAAACAAGGCGCTGTTGCCCCATGCGCCGCCTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGACTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCGCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGCGCTAGTAATGTCAACAAGATGTTACAGGAGTTGCCGGAGCACCAGCGGAGCGACGCCGTGAGCTCGATGGTGTACGAAGCGAACGCAAGGGTTCGAGATCCAGTGTACGGCTGCGTGGGAGCCATATCGTCGCTGCAACAGCAAATCGATCTGTTACAAACGGAGCTAGCGATTGCGCAAGCGGAAGTAGTACACATGCGAATGCGTCAATTCACATCGTCATCGTCGAACCCGACAGCCGGACACTCGCCGGAGACTGCGTCGCCGTCGGGCAAGATCAACATTCCGCCGCAAAACAAGTCCTATTTTTCCATGGACAACATGGGGGAGTCGTTGTGGTCATCCTGCTAG | 501 | 55.69 | MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 137845 | 139288 | + | CmoCh02G000230.1 | Cmo02g00023 | 375620 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00023 | 166 | MobiDBLite | consensus disorder prediction | 120 | 150 | - | - | |
Cmo02g00023 | 166 | Coils | Coil | 92 | 112 | - | - | |
Cmo02g00023 | 166 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
Cmo02g00023 | 166 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - | |
Cmo02g00023 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 156 | - | - | |
Cmo02g00023 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 1 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00023 | Cmo-Chr2:137845 | Cmo11g02055 | Cmo-Chr11:13918212 | 2.61E-67 | dispersed | |
Cmo02g00195 | Cmo-Chr2:918070 | Cmo02g00023 | Cmo-Chr2:137845 | 3.93E-24 | dispersed | |
Cmo18g01029 | Cmo-Chr18:11077585 | Cmo02g00023 | Cmo-Chr2:137845 | 1.97E-10 | dispersed | |
Cmo20g00354 | Cmo-Chr20:1742608 | Cmo02g00023 | Cmo-Chr2:137845 | 1.65E-48 | dispersed | |
Cmo20g00502 | Cmo-Chr20:2396456 | Cmo02g00023 | Cmo-Chr2:137845 | 3.48E-51 | dispersed | |
Cmo02g00023 | Cmo-Chr2:137845 | Cmo04g01166 | Cmo-Chr4:5949123 | 1.11E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9178 | PF03195 | LOB | 6.90E-44 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00023 | - | - | csv:101220394 | 292.352 |