Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00023 ATGAAGGAGAGTGGACGGAAACAAGGCGCTGTTGCCCCATGCGCCGCCTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGACTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCGCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGCGCTAGTAATGTCAACAAGATGTTACAGGAGTTGCCGGAGCACCAGCGGAGCGACGCCGTGAGCTCGATGGTGTACGAAGCGAACGCAAGGGTTCGAGATCCAGTGTACGGCTGCGTGGGAGCCATATCGTCGCTGCAACAGCAAATCGATCTGTTACAAACGGAGCTAGCGATTGCGCAAGCGGAAGTAGTACACATGCGAATGCGTCAATTCACATCGTCATCGTCGAACCCGACAGCCGGACACTCGCCGGAGACTGCGTCGCCGTCGGGCAAGATCAACATTCCGCCGCAAAACAAGTCCTATTTTTCCATGGACAACATGGGGGAGTCGTTGTGGTCATCCTGCTAG 501 55.69 MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 137845 139288 + CmoCh02G000230.1 Cmo02g00023 375620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00023 166 MobiDBLite consensus disorder prediction 120 150 - -
Cmo02g00023 166 Coils Coil 92 112 - -
Cmo02g00023 166 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cmo02g00023 166 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Cmo02g00023 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 156 - -
Cmo02g00023 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00023 Cmo-Chr2:137845 Cmo11g02055 Cmo-Chr11:13918212 2.61E-67 dispersed
Cmo02g00195 Cmo-Chr2:918070 Cmo02g00023 Cmo-Chr2:137845 3.93E-24 dispersed
Cmo18g01029 Cmo-Chr18:11077585 Cmo02g00023 Cmo-Chr2:137845 1.97E-10 dispersed
Cmo20g00354 Cmo-Chr20:1742608 Cmo02g00023 Cmo-Chr2:137845 1.65E-48 dispersed
Cmo20g00502 Cmo-Chr20:2396456 Cmo02g00023 Cmo-Chr2:137845 3.48E-51 dispersed
Cmo02g00023 Cmo-Chr2:137845 Cmo04g01166 Cmo-Chr4:5949123 1.11E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9178 PF03195 LOB 6.90E-44 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00023 - - csv:101220394 292.352