Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00038 ATGGCGTCTGGGAATTCATTGAATGATCATTTATCCAAGAGGACTTCATTTTGGGGGTTGTCGTTGTGGGTTTTGATCTGTATTTGTATTGGTGCATTCATAGTTTTGATTCTTGGCTTATTATCTATTTGGATCTTGTTTAGAAAAAAATCTAAACGATCCATGGATAAATTCCCCATGTCCCAGATACCTAATTTTTCAAAAGATATCAGGATAGACCAGGTTGGGGCTCAAACTCAAACTCAAACTCAAACTCCCAATGACCACCCCGAAAATCGACTTCTTTCGGTTGATATCAAAAGGAATGATGAAAACTCTGAAGTTATGGCTGTGACAAAATCAACTGAGCCTGATAATAACAGCCAAGGCAGTTCGAATTATCGACACGAAAAAGCAGGCAATTCACAATCAGGGGAAGAAGGAAGCTCTGGAAAAGCTAGATCGTACGGAGGAATTGTGCCACCGTCGCCTCTCGTAGGCTTGCCAGAAGTTTCACATCTTGGATGGGGTCACTGGTTCACTCTCAGGGATCTACAGCTTGCAACGAATCGTTTTTCGTCCGAAAATATTCTTGGAGAGGGAGGATATGGGGTTGTATATAAAGGCAGACTCATCAATGACACTGAAGTTGCCGTGAAAAAGCTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTTCGAGTCGAAGTGGAGGCTATTGGCCATGTTCGACATAAGAATCTCGTTCGATTGCTCGGTTATTGCATAGAAGGCGTTCATAGGATGCTAGTCTATGAATATGTGAACAATGGCAATCTAGAACAGTGGCTACATGGAGCCATGAGCCAACACGGCACGCTTACGTGGGAGGCTCGTATGAAGGTGCTTCTTGGCACTGCGAAGGCGCTTGCGTATTTACACGAAGCAATCGAGCCAAAAGTTGTTCATAGAGATATAAAATCAAGCAACATTTTGATCGATGATGAGTTCAATGCCAAAGTTTCCGATTTCGGATTGGCCAAACTCTTGGACTCTGGGGAGAGTCATATTACAACTAGAGTTATGGGAACATTTGGGTACGTGGCACCTGAATATGCAAATACCGGTTTGTTGAACGAAAAGAGTGACATTTATAGCTTCGGCGTTCTCTTGCTGGAAGCAATTACAGGGAGAGACCCGGTTAATCTTGTTGAGTGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACATGAATCTTGACGTAAAGCCTACTACTCGAGCATTGAAACGTGCCCTTCTCGTTGCACTTCGGTGTATCGATCCCGAATCAATCAAGAGACCCAAGATGAGTCAAGTTGTAAGGATGCTGGAAGCCGATGAATTTCCACTTCACGAGGTACCAAAATCAGTATCTTGTTTTCGTGACTGCATGATCGATTATCGTCCATTCTCGTTTGTCTACATTTCAAGCGTTTCACTGATAATACATGAAGGTGGTCCTGCTTTGGCATGGCTGTGTTGGCAGCTAACTCATCAAACATTCTTAATTACTAGCCAAAACACTTTAACTATGCGGGTTGTGATCAGATGGGTGGGGCATCAGAGACAAGCCATGGAGGATAGAAAGAGATCTGAATTGATGGTGGTCGATCGAGCTTCTGGTGTTTGCTCACACAGACAAAAGGGTTTGAGAGAGAGAGAGAGAGATTGTACAGACTTGTCTGAAGGACCACCTGACATGGCCCACCTGTCTTGTCTTTAA 1734 43.66 MASGNSLNDHLSKRTSFWGLSLWVLICICIGAFIVLILGLLSIWILFRKKSKRSMDKFPMSQIPNFSKDIRIDQVGAQTQTQTQTPNDHPENRLLSVDIKRNDENSEVMAVTKSTEPDNNSQGSSNYRHEKAGNSQSGEEGSSGKARSYGGIVPPSPLVGLPEVSHLGWGHWFTLRDLQLATNRFSSENILGEGGYGVVYKGRLINDTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMSQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVNLVEWLKMMVATRRAEEVVDMNLDVKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEVPKSVSCFRDCMIDYRPFSFVYISSVSLIIHEGGPALAWLCWQLTHQTFLITSQNTLTMRVVIRWVGHQRQAMEDRKRSELMVVDRASGVCSHRQKGLRERERDCTDLSEGPPDMAHLSCL 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 209735 212670 + CmoCh02G000380.1 Cmo02g00038 375635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00038 577 MobiDBLite consensus disorder prediction 93 107 - -
Cmo02g00038 577 Pfam Protein kinase domain 186 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00038 577 MobiDBLite consensus disorder prediction 77 91 - -
Cmo02g00038 577 CDD STKc_IRAK 191 448 - -
Cmo02g00038 577 MobiDBLite consensus disorder prediction 108 143 - -
Cmo02g00038 577 SMART serkin_6 185 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00038 577 SUPERFAMILY Protein kinase-like (PK-like) 169 465 IPR011009 -
Cmo02g00038 577 PANTHER OS01G0323000 PROTEIN 3 457 - -
Cmo02g00038 577 PANTHER OS10G0497600 PROTEIN 3 457 - -
Cmo02g00038 577 Coils Coil 205 225 - -
Cmo02g00038 577 MobiDBLite consensus disorder prediction 77 147 - -
Cmo02g00038 577 Gene3D Phosphorylase Kinase; domain 1 166 260 - -
Cmo02g00038 577 Gene3D Transferase(Phosphotransferase) domain 1 261 456 - -
Cmo02g00038 577 ProSitePatterns Protein kinases ATP-binding region signature. 191 214 IPR017441 GO:0005524
Cmo02g00038 577 ProSiteProfiles Protein kinase domain profile. 185 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00038 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00038 Cmo11g02045 CCT
Cmo02g00038 Cmo20g00285 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00038 Cmo-Chr2:209735 Cmo17g00387 Cmo-Chr17:2404272 0 dispersed
Cmo11g02045 Cmo-Chr11:13879578 Cmo02g00038 Cmo-Chr2:209735 0 wgd
Cmo19g01111 Cmo-Chr19:9447468 Cmo02g00038 Cmo-Chr2:209735 0 wgd
Cmo02g00038 Cmo-Chr2:209735 Cmo20g00285 Cmo-Chr20:1382946 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74078 PF00069 Pkinase 5.70E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00038 - - csv:101214087 802.742