Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00040 ATGGTGGGCTTCTGTACTTGTGATCCGGTAGTTCTTCTCGCTTCAGAAGTTTGGACTTCCCTCATTTTGTCCAGAATGCAGCAAGATCAACACAAAAAGTTTATGCAACAGAATTCAACCGAAGTGGAGTTCTTCTCTGATTATGGCGATGCCAGTCGATACAAAATTCAGGAGGTAATCGGGAAAGGAAGCTATGGTGTGGTGTGTTCTGCGATGGACACTCGCACCGGCGACAAGGTTGCTATAAAGAAGATTCATAATATTTTTGAGCATATATCTGATGCTGTTAGAATTCTCCGTGAGATAAAGCTGCTTAGGCTTCTTCGTCATCCTGATATTGTTGAAATTAAACACATTATGCTCCCTCCTTCAAGGAGGGACTTCAAAGATATCTACGTTGTTTTTGAGCTCATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGATCTGACTCGAGAACACTATCAGTTTTTTCTCTATCAACTTCTTCGTGCGTTAAAGTATATTCATACAGGTGCTACTCATGTATCATTTTGGTCATATCTGACTCAGAAGCTTCGTGTTGCAGCGAATGTCTACCATCGGGATTTGAAACCGAAGAATATATTGGCAAATGCAAATTGTAAACTTAAAATTTGTGATTTTGGATTGGCAAGAGTCGCGTTTAGTGACACGCCAACGACAGTTTTCTGGACGGTATGCCGTTTTCTTAAGATTTGTAGAAAAATTAATGATATGTATCTTGTGTTCTTGTATACACCTGCAATTGATATTTGGAGTATTGGCTGCATATTTGCTGAAGTATTAATGGGGAAGCCACTTTTTCCTGGCAAAAACGTTGTTCACCAGCTCGATTTGATGACGGACCTTCTTGGAACTCCTTCATTAGATACAATCTCCAGGGTTCGTAACGACAAGGCTAGACGATATTTAACGACCATGCGGAAAAAGCAGCCGGTTTCATTTGCTCAAAAGTTTCCAAATGCTGATCCTTTAGCGCTGAGGCTATTAGAAAGGTTGCTTGCTTTTGATCCAAAAGATAGGCCAACTGCTGAAGAGGCATTGGCAGATCCATACTTCAAGGGATTGGCGAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCACAAAGATGGAATTTGAATTTGAGAGGCGGAGGGTAATAAAAGAAGACATTCAAGAGCTAATCTTCCGTGAGATATTAGAATATCATCCCCAGCTACTAAAAGACTATATGAATGGGACTGAGAGAACAAATTTTCTATATCCAAGGTTGAAATTAAATTTTATTGCACATGTATGTATGTGCAGTGCTGTTGATCAATTTAGAAAGCAGTTTGCACATCTGGAGGAAAATGGTGGTAAAAGTGCACCGGCAATTCCTCTTGACAGAAAGCACGTATCCCTCCCAAGTATTCTATACGTCTGCACTCAAATAACGTCTTTGCTGCCCAGACTTTCATTGGCACTGAACATTTATACATGCATGTCAACAGTTGTACACTCGAACCCGGTCTATTCTAAGGACCAACTAAACAACGTACCCGTCCAAGATGGGAAGATCTCCGAACAGGCATACAGCAAGAATTCCAGAGATAGCGAAGGGCGGCTAACAAATATATCAAGAACCATGCAGGCACCACAAAAGATCCCATTTGCAGCCAAGCCTGGAAGAGTGGTTGGACCAGTTATAGCAGATGAGAGCGGAATGCGAGTGAAGGAACCATACGATCCTAGAACGTTGATCAGAGGTGCCATTCTTCCTCCTGCATATCATTACCAGAAACCCTATGCAGCAAATCAAGAAAGATCTGCAGCAGAAACGAAACTGGATATTTCACTAAGGGCCACCAAGCAAGCTTCCCAGTGTGGCATGGCTTCCAAAATAGGAACAGACATAGCCATCAGCATTGACTCGAACCCCTTTTATATGACACGTGCCGGAGTGAACAAGGTCGAACTCAAGGACCAAATATCCATCGACGCTAACTTTCTACAGGCCAAGGCCTCCCAATACAGTGGCATTGGTGCAGCAACCGCCACCGCCACCTCGGTTGCTCACAGAAAGGTCGTTGCCGGTCAGTTTAGCATGACAAAGATGTACTAA 2112 42.57 MVGFCTCDPVVLLASEVWTSLILSRMQQDQHKKFMQQNSTEVEFFSDYGDASRYKIQEVIGKGSYGVVCSAMDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTGATHVSFWSYLTQKLRVAANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTVCRFLKICRKINDMYLVFLYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVSFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKMEFEFERRRVIKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPRLKLNFIAHVCMCSAVDQFRKQFAHLEENGGKSAPAIPLDRKHVSLPSILYVCTQITSLLPRLSLALNIYTCMSTVVHSNPVYSKDQLNNVPVQDGKISEQAYSKNSRDSEGRLTNISRTMQAPQKIPFAAKPGRVVGPVIADESGMRVKEPYDPRTLIRGAILPPAYHYQKPYAANQERSAAETKLDISLRATKQASQCGMASKIGTDIAISIDSNPFYMTRAGVNKVELKDQISIDANFLQAKASQYSGIGAATATATSVAHRKVVAGQFSMTKMY 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 218307 224050 + CmoCh02G000400.1 Cmo02g00040 375637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00040 703 Gene3D Transferase(Phosphotransferase) domain 1 140 385 - -
Cmo02g00040 703 Gene3D Phosphorylase Kinase; domain 1 69 408 - -
Cmo02g00040 703 ProSitePatterns Protein kinases ATP-binding region signature. 60 84 IPR017441 GO:0005524
Cmo02g00040 703 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 420 - -
Cmo02g00040 703 CDD STKc_TDY_MAPK 53 407 - -
Cmo02g00040 703 SUPERFAMILY Protein kinase-like (PK-like) 50 366 IPR011009 -
Cmo02g00040 703 Pfam Protein kinase domain 54 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00040 703 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 420 - -
Cmo02g00040 703 SMART serkin_6 54 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00040 703 ProSiteProfiles Protein kinase domain profile. 54 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00040 Cmo-Chr2:218307 Cmo08g01148 Cmo-Chr8:7341665 0 dispersed
Cmo11g02038 Cmo-Chr11:13860920 Cmo02g00040 Cmo-Chr2:218307 0 wgd
Cmo19g01097 Cmo-Chr19:9403201 Cmo02g00040 Cmo-Chr2:218307 0 wgd
Cmo02g00040 Cmo-Chr2:218307 Cmo20g00282 Cmo-Chr20:1368617 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74079 PF00069 Pkinase 7.40E-51 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00040 - - csv:101216657 1068.53