Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00047 ATGAGCAGATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGAACCAGCTCATGGCCATGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTGTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGGGACATGAAAAGAGAAACAAAGTATCCTGACAATGTGGTAACTAAATCACTCAAGGCCCTTCAAGGCAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACCGGCGGTAATTGGTACAGCGATGGAAAGCTCGACAGAGAATACATCAGTACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGATGAAGGTGGCTACAATTGAAGGGATCGTGGACTCATTCAAGAAGAGCGGAGCGTCCAAAGTGGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTGATGGAGGTGAAGAGCACTGGCGCAGGGGAGTTTGATTTTATTCCGGTTGGGAAGATTTGTTATAAGAGCTATGCTAAAGGAGTTAAAGGGGAGCCCAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAATCATTGCACCCCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACACCAAGTGTTCGCTGTTCATCGTCCAAAGTCGCCGTTTAAGCGATGCAGTCCCAATCTCAACAGTGTCACCAGCGAAATGTTTCTGGATTTTCGTTTTCTTTATTCTAATTATCCATCAGAATCTTAAAAATTTGCGCATAAAGCTTTGTTCCGTGACAAAGGGGGAGAGGAATTCGATTCCTTTGTCGAACCGAGCTTTCGAGGAATGTAGCATATATATTTTGTCTGCTGTAGTGTTTTTTGAGGTGGTGCCAATTTGTTTCTTCTCTGCCTTCATGGATTCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCGTCGCTCCAGCCGGAACGGCAAGGCTCGACAGCGGTTGCCGAGGAGTTGGATGATTCGATCGCGATTGATCCTGGGATTAAGCTGATGTACCTGTCGAATGATGGCGACTCGGATGGGATTAGAGAGCTGCTGGATTCGGGTGCCGACGTGAATTTTCGCGACATTGACGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCAGGCCAGGGATTGTTGAGATACTACTCGAAAGAGGAGCGGAGGTCGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATCAGGAAGTGATCAAGCTCTTAGAGAAACATGGTGCTAGGCTACCGATGGCTCCAATGCTTGTGCAAAATGCTCTTGAAGTCCCGGAATATGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCTGCATTGCATCATGGCGGGGAATTGAAGTTGCTGTGAAAACACTAGGAGAGGAAGTTTTCACTGATGAGGATAAAGTGAAGGCATTCAGGGATGAACTTGCTTTACTTCAAAAGATACGGCATCCTAACGTTGTCCAATTTTTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCATGGAGTATTTGCCACAGGGAGACCTTCATGCATACTTGAAACGGAAAGGTTCCTTGAAGCTAGCAACAGTTGTTAAGTTTGCTCTTGACATTGCTAGGGGAATGAATTATTTACATGAGCATAAACCTGAAGCAATAATTCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTATGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTGAAATTGTCAAATAGGGTCAAAGAAGACAGACCTGTGGCTGTGGCATGTCACGATACTTCATGGCGATATGTGGCGCCTGAGGTTTATAAAGATGAAGAATACGATACGAAAGTGGATGTATTTTCATTTGCCTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAAAGCCAGAAAACGAAGTACCTAAAGCTTATATAGCTGGTGAACGCCCACCATTTATGGCTCCAACTAAGCGTTATGCAGATGGAGTGAAGGAGCTAATCGAGGAATGTTGGGAAGAGAAGCCACATAAAAGACCCACGTTTCGGCAAATAATAAGAAGGTTGGAGGATATCAACAATGAACTTATGCACACAAGGAGCTTGAAGATGAATCATTTCTGCAATTGCTTCGGGAACCTGACAGCCTTGTTTAAAAGGGAAAGGACTAGTCCAGGCAGCAGATCTTTCTCGAAAAGCAAATGA 2358 44.23 MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKCSLFIVQSRRLSDAVPISTVSPAKCFWIFVFFILIIHQNLKNLRIKLCSVTKGERNSIPLSNRAFEECSIYILSAVVFFEVVPICFFSAFMDSNVRARFTLGKQSSLQPERQGSTAVAEELDDSIAIDPGIKLMYLSNDGDSDGIRELLDSGADVNFRDIDGRTSLHVAACQGRPGIVEILLERGAEVDVQDRWGSTPLADAIYYKNQEVIKLLEKHGARLPMAPMLVQNALEVPEYEINPNELDFSKSVNITKGTFCIASWRGIEVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVMEYLPQGDLHAYLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSMHLKVADFGVSKLLKLSNRVKEDRPVAVACHDTSWRYVAPEVYKDEEYDTKVDVFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFMAPTKRYADGVKELIEECWEEKPHKRPTFRQIIRRLEDINNELMHTRSLKMNHFCNCFGNLTALFKRERTSPGSRSFSKSK 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 243063 253860 - CmoCh02G000470.1 Cmo02g00047 375644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00047 785 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 334 766 - -
Cmo02g00047 785 Pfam Ankyrin repeats (3 copies) 368 455 IPR002110 GO:0005515
Cmo02g00047 785 ProSiteProfiles Protein kinase domain profile. 446 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00047 785 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 334 766 - -
Cmo02g00047 785 SUPERFAMILY Ankyrin repeat 347 457 IPR036770 -
Cmo02g00047 785 MobiDBLite consensus disorder prediction 1 22 - -
Cmo02g00047 785 Pfam RNA polymerase Rpc34 subunit 128 234 IPR007832 GO:0005666|GO:0006383
Cmo02g00047 785 Pfam RNA polymerase Rpc34 subunit 26 127 IPR007832 GO:0005666|GO:0006383
Cmo02g00047 785 ProSiteProfiles Ankyrin repeat profile. 396 428 IPR002110 GO:0005515
Cmo02g00047 785 SUPERFAMILY Protein kinase-like (PK-like) 488 741 IPR011009 -
Cmo02g00047 785 Pfam Protein tyrosine and serine/threonine kinase 496 740 IPR001245 GO:0004672|GO:0006468
Cmo02g00047 785 CDD STKc_MAP3K-like 487 740 - -
Cmo02g00047 785 Gene3D - 27 90 IPR036388 -
Cmo02g00047 785 Gene3D Transferase(Phosphotransferase) domain 1 467 762 - -
Cmo02g00047 785 SUPERFAMILY Winged helix DNA-binding domain 27 89 IPR036390 -
Cmo02g00047 785 Gene3D - 331 466 IPR036770 -
Cmo02g00047 785 ProSiteProfiles Ankyrin repeat region circular profile. 396 428 - -
Cmo02g00047 785 SMART ANK_2a 429 458 IPR002110 GO:0005515
Cmo02g00047 785 SMART ANK_2a 396 425 IPR002110 GO:0005515
Cmo02g00047 785 SMART ANK_2a 347 392 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00047 Cmo-Chr2:243063 Cmo03g01350 Cmo-Chr3:9989335 0 dispersed
Cmo11g01513 Cmo-Chr11:10732294 Cmo02g00047 Cmo-Chr2:243063 2.58E-132 transposed
Cmo02g00047 Cmo-Chr2:243063 Cmo20g00274 Cmo-Chr20:1334263 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74080 PF07714 PK_Tyr_Ser-Thr 3.40E-57 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00047 - - cpep:111777411 811.216