Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00047 | ATGAGCAGATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGAACCAGCTCATGGCCATGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTGTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGGGACATGAAAAGAGAAACAAAGTATCCTGACAATGTGGTAACTAAATCACTCAAGGCCCTTCAAGGCAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACCGGCGGTAATTGGTACAGCGATGGAAAGCTCGACAGAGAATACATCAGTACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGATGAAGGTGGCTACAATTGAAGGGATCGTGGACTCATTCAAGAAGAGCGGAGCGTCCAAAGTGGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTGATGGAGGTGAAGAGCACTGGCGCAGGGGAGTTTGATTTTATTCCGGTTGGGAAGATTTGTTATAAGAGCTATGCTAAAGGAGTTAAAGGGGAGCCCAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAATCATTGCACCCCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACACCAAGTGTTCGCTGTTCATCGTCCAAAGTCGCCGTTTAAGCGATGCAGTCCCAATCTCAACAGTGTCACCAGCGAAATGTTTCTGGATTTTCGTTTTCTTTATTCTAATTATCCATCAGAATCTTAAAAATTTGCGCATAAAGCTTTGTTCCGTGACAAAGGGGGAGAGGAATTCGATTCCTTTGTCGAACCGAGCTTTCGAGGAATGTAGCATATATATTTTGTCTGCTGTAGTGTTTTTTGAGGTGGTGCCAATTTGTTTCTTCTCTGCCTTCATGGATTCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCGTCGCTCCAGCCGGAACGGCAAGGCTCGACAGCGGTTGCCGAGGAGTTGGATGATTCGATCGCGATTGATCCTGGGATTAAGCTGATGTACCTGTCGAATGATGGCGACTCGGATGGGATTAGAGAGCTGCTGGATTCGGGTGCCGACGTGAATTTTCGCGACATTGACGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCAGGCCAGGGATTGTTGAGATACTACTCGAAAGAGGAGCGGAGGTCGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATCAGGAAGTGATCAAGCTCTTAGAGAAACATGGTGCTAGGCTACCGATGGCTCCAATGCTTGTGCAAAATGCTCTTGAAGTCCCGGAATATGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCTGCATTGCATCATGGCGGGGAATTGAAGTTGCTGTGAAAACACTAGGAGAGGAAGTTTTCACTGATGAGGATAAAGTGAAGGCATTCAGGGATGAACTTGCTTTACTTCAAAAGATACGGCATCCTAACGTTGTCCAATTTTTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCATGGAGTATTTGCCACAGGGAGACCTTCATGCATACTTGAAACGGAAAGGTTCCTTGAAGCTAGCAACAGTTGTTAAGTTTGCTCTTGACATTGCTAGGGGAATGAATTATTTACATGAGCATAAACCTGAAGCAATAATTCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTATGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTGAAATTGTCAAATAGGGTCAAAGAAGACAGACCTGTGGCTGTGGCATGTCACGATACTTCATGGCGATATGTGGCGCCTGAGGTTTATAAAGATGAAGAATACGATACGAAAGTGGATGTATTTTCATTTGCCTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAAAGCCAGAAAACGAAGTACCTAAAGCTTATATAGCTGGTGAACGCCCACCATTTATGGCTCCAACTAAGCGTTATGCAGATGGAGTGAAGGAGCTAATCGAGGAATGTTGGGAAGAGAAGCCACATAAAAGACCCACGTTTCGGCAAATAATAAGAAGGTTGGAGGATATCAACAATGAACTTATGCACACAAGGAGCTTGAAGATGAATCATTTCTGCAATTGCTTCGGGAACCTGACAGCCTTGTTTAAAAGGGAAAGGACTAGTCCAGGCAGCAGATCTTTCTCGAAAAGCAAATGA | 2358 | 44.23 | MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKCSLFIVQSRRLSDAVPISTVSPAKCFWIFVFFILIIHQNLKNLRIKLCSVTKGERNSIPLSNRAFEECSIYILSAVVFFEVVPICFFSAFMDSNVRARFTLGKQSSLQPERQGSTAVAEELDDSIAIDPGIKLMYLSNDGDSDGIRELLDSGADVNFRDIDGRTSLHVAACQGRPGIVEILLERGAEVDVQDRWGSTPLADAIYYKNQEVIKLLEKHGARLPMAPMLVQNALEVPEYEINPNELDFSKSVNITKGTFCIASWRGIEVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVMEYLPQGDLHAYLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSMHLKVADFGVSKLLKLSNRVKEDRPVAVACHDTSWRYVAPEVYKDEEYDTKVDVFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFMAPTKRYADGVKELIEECWEEKPHKRPTFRQIIRRLEDINNELMHTRSLKMNHFCNCFGNLTALFKRERTSPGSRSFSKSK | 785 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 243063 | 253860 | - | CmoCh02G000470.1 | Cmo02g00047 | 375644 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00047 | 785 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 334 | 766 | - | - | |
Cmo02g00047 | 785 | Pfam | Ankyrin repeats (3 copies) | 368 | 455 | IPR002110 | GO:0005515 | |
Cmo02g00047 | 785 | ProSiteProfiles | Protein kinase domain profile. | 446 | 748 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00047 | 785 | PANTHER | INTEGRIN-LINKED KINASE FAMILY PROTEIN | 334 | 766 | - | - | |
Cmo02g00047 | 785 | SUPERFAMILY | Ankyrin repeat | 347 | 457 | IPR036770 | - | |
Cmo02g00047 | 785 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cmo02g00047 | 785 | Pfam | RNA polymerase Rpc34 subunit | 128 | 234 | IPR007832 | GO:0005666|GO:0006383 | |
Cmo02g00047 | 785 | Pfam | RNA polymerase Rpc34 subunit | 26 | 127 | IPR007832 | GO:0005666|GO:0006383 | |
Cmo02g00047 | 785 | ProSiteProfiles | Ankyrin repeat profile. | 396 | 428 | IPR002110 | GO:0005515 | |
Cmo02g00047 | 785 | SUPERFAMILY | Protein kinase-like (PK-like) | 488 | 741 | IPR011009 | - | |
Cmo02g00047 | 785 | Pfam | Protein tyrosine and serine/threonine kinase | 496 | 740 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo02g00047 | 785 | CDD | STKc_MAP3K-like | 487 | 740 | - | - | |
Cmo02g00047 | 785 | Gene3D | - | 27 | 90 | IPR036388 | - | |
Cmo02g00047 | 785 | Gene3D | Transferase(Phosphotransferase) domain 1 | 467 | 762 | - | - | |
Cmo02g00047 | 785 | SUPERFAMILY | Winged helix DNA-binding domain | 27 | 89 | IPR036390 | - | |
Cmo02g00047 | 785 | Gene3D | - | 331 | 466 | IPR036770 | - | |
Cmo02g00047 | 785 | ProSiteProfiles | Ankyrin repeat region circular profile. | 396 | 428 | - | - | |
Cmo02g00047 | 785 | SMART | ANK_2a | 429 | 458 | IPR002110 | GO:0005515 | |
Cmo02g00047 | 785 | SMART | ANK_2a | 396 | 425 | IPR002110 | GO:0005515 | |
Cmo02g00047 | 785 | SMART | ANK_2a | 347 | 392 | IPR002110 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00047 | Cmo-Chr2:243063 | Cmo03g01350 | Cmo-Chr3:9989335 | 0 | dispersed | |
Cmo11g01513 | Cmo-Chr11:10732294 | Cmo02g00047 | Cmo-Chr2:243063 | 2.58E-132 | transposed | |
Cmo02g00047 | Cmo-Chr2:243063 | Cmo20g00274 | Cmo-Chr20:1334263 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74080 | PF07714 | PK_Tyr_Ser-Thr | 3.40E-57 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00047 | - | - | cpep:111777411 | 811.216 |