Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00060 ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATGTCTCGGAGGCGCTCTGGCGGTTGGAAATTAGCGATAATCAAGATGGAGGCGACGCGGCAGAATCAAGCCCTTACCCCGATCGTCCTGGCGAACCTGATTGCTTGTATTATATGAGAACTGGCTCTTGTAGCTATGGAAGTAATTGTCGCTTCAATCATCCTGTCTACGTTGCTCAGGGTGCTCTTTATAATGGGGAATTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCGTGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTCAACATTTTAGGTCTTCCCATGCGACAGGAAGAAAAGTCGTGTTCTTATTATTTGCGCACGGGATCATGTAAATTTGGAGTTTCATGCAAGTTTAATCATCCCCAGCCAGCACCAGTTGGGAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTAGTGGAATTCCTGCTTGGTCATTGCCTAGAGTGCAATATATGCCTGGTCCATGTGTACAAGGGCAACAATCTTATGTGCCTGTCCTGGTTTCTCCACCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTATGTGAGCAATGTCAGTCCTGTTCTTCCCAACCTTGGTTATAATTCTGTCAATTTGGAAGACTCGCATTCTAATGGGCAGTTGGCTTTATCAACATCAACTCTAACGCTACCCGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTTCATCATCCGAAACAAAGAATTGCACAATCAGCAACGAATGTGCTTGGGCTTCCTTCAAGACCGGGGCAAGCTGTATGTTCATACTACAGTATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAACTATGGCTTCACTCTGCCTGTGCTCAATTCATCTTTCATGAAGTATCCTAGCAACAACTATACGTTGTCATCGCACGATACCTTGCCCCAGACGATATCCAAATCGTCTGAATGGGTTCAGAAAGCTGATCCTCCGAACAACAAACAGCAAACCACCGATACGAAAGTGGATGATGGCACAGCTGAAGAGGTTTCCTCTGTTTCATGCTCATTATCAGTATGTTGTCAAGGAATTACAAATTTTCTTTACTTTATACCTCCCCTATGCCCCAATTTCACCTGTGATAATGTGGGAGTGAAAACAAGTTGCATGGAGATTTGTTTACTTGAGTCATCTGTTGTGGGGCAGGGGAAGGCATTTTTTGTGTTGAATAAAGTGCAGGTTGGAGGCGAAGAAGAGGAAGAAGAAGAACAAGAAGAAAAAAACCAGAGACAAAAATGGAGGTTCAAAATTGACAGTCCGATTCGAAAGGAGTCTCATTTCGGTTCGAAGATTTTTCCTCTTTCATCCATGCGGCGAGGCAGGCCCTCAGATCCATTTACAGCGACAGAAGTGCCGAAATCTACCGTTCAGCGCGAGAATCCTCTCAAAGAGATCCGATACCGAGGCGTTCGGAAGCGTCCTTGGGGAAGATACGCCGCGGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTTGATTCTGCTGAAGAGGCTGCTCGTGCTTACGATACTGCTGCTCGGTCCCTCCGTGGAGCCAAGGCCAAAACTAACTTTCCTTTACATCCATCGACGATTTCGATTCAGCAACCTATTCCGTTTTATCAATCGCCGCCGGATTTGATCGATTCGAACGGTTTTGGCAAGATTGAGTGTGTCCAGGCTAATAGGCCTACGTCGAGCAGCTTGAGTTCCACTGTTGAGTCGTTTAGTGGGCCGCGGATTTCTAACCCTTTGTCGTCGTTGTCGATGGTTCCCCGGAGGCCGGTGCAGCCTGTTTCGCCCGACGACTGCCACAGCGACTGTGATTCCTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTTCTCGCTTCTTTCCGTAGAGCCTTGCCGTTCGATCTTAACTTACCACCTCCCATGGACGTCGTGGATTTAACTGGTGATGATCTTCAAGCTACTGCTTTATGCCTCTGA 2223 46.74 MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCSYYLRTGSCKFGVSCKFNHPQPAPVGNMLPQARPGALGSAGTPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVSNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSSVSCSLSVCCQGITNFLYFIPPLCPNFTCDNVGVKTSCMEICLLESSVVGQGKAFFVLNKVQVGGEEEEEEEQEEKNQRQKWRFKIDSPIRKESHFGSKIFPLSSMRRGRPSDPFTATEVPKSTVQRENPLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDTAARSLRGAKAKTNFPLHPSTISIQQPIPFYQSPPDLIDSNGFGKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVPRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 309781 317857 - CmoCh02G000600.1 Cmo02g00060 375657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00060 740 ProSiteProfiles AP2/ERF domain profile. 552 609 IPR001471 GO:0003700|GO:0006355
Cmo02g00060 740 MobiDBLite consensus disorder prediction 670 695 - -
Cmo02g00060 740 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Cmo02g00060 740 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Cmo02g00060 740 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Cmo02g00060 740 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Cmo02g00060 740 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Cmo02g00060 740 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cmo02g00060 740 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Cmo02g00060 740 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Cmo02g00060 740 CDD AP2 552 609 IPR001471 GO:0003700|GO:0006355
Cmo02g00060 740 SMART rav1_2 552 615 IPR001471 GO:0003700|GO:0006355
Cmo02g00060 740 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Cmo02g00060 740 MobiDBLite consensus disorder prediction 1 17 - -
Cmo02g00060 740 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Cmo02g00060 740 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 7 404 - -
Cmo02g00060 740 SUPERFAMILY CCCH zinc finger 319 344 IPR036855 GO:0046872
Cmo02g00060 740 Gene3D - 272 353 - -
Cmo02g00060 740 Gene3D - 43 121 - -
Cmo02g00060 740 Gene3D AP2/ERF domain 551 611 IPR036955 GO:0003700|GO:0006355
Cmo02g00060 740 MobiDBLite consensus disorder prediction 1 20 - -
Cmo02g00060 740 Gene3D - 122 170 - -
Cmo02g00060 740 SUPERFAMILY CCCH zinc finger 279 304 IPR036855 GO:0046872
Cmo02g00060 740 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872
Cmo02g00060 740 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872
Cmo02g00060 740 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Cmo02g00060 740 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Cmo02g00060 740 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Cmo02g00060 740 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 72 IPR000571 GO:0046872
Cmo02g00060 740 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872
Cmo02g00060 740 PANTHER PROTEIN PHOSPHATASE RELATED 7 404 - -
Cmo02g00060 740 Pfam AP2 domain 552 601 IPR001471 GO:0003700|GO:0006355
Cmo02g00060 740 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Cmo02g00060 740 MobiDBLite consensus disorder prediction 389 411 - -
Cmo02g00060 740 PRINTS Ethylene responsive element binding protein signature 575 591 IPR001471 GO:0003700|GO:0006355
Cmo02g00060 740 PRINTS Ethylene responsive element binding protein signature 553 564 IPR001471 GO:0003700|GO:0006355
Cmo02g00060 740 SUPERFAMILY DNA-binding domain 552 610 IPR016177 GO:0003677
Cmo02g00060 740 MobiDBLite consensus disorder prediction 389 406 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00060 Cmo20g00257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00060 Cmo-Chr2:309781 Cmo20g00258 Cmo-Chr20:1266321 8.68E-123 dispersed
Cmo09g00840 Cmo-Chr9:4302114 Cmo02g00060 Cmo-Chr2:309781 9.75E-32 dispersed
Cmo11g00260 Cmo-Chr11:1283170 Cmo02g00060 Cmo-Chr2:309781 1.66E-19 dispersed
Cmo13g00650 Cmo-Chr13:6895551 Cmo02g00060 Cmo-Chr2:309781 1.42E-30 dispersed
Cmo19g01154 Cmo-Chr19:9711397 Cmo02g00060 Cmo-Chr2:309781 1.04E-09 transposed
Cmo11g02018 Cmo-Chr11:13773470 Cmo02g00060 Cmo-Chr2:309781 2.13E-68 wgd
Cmo19g01079 Cmo-Chr19:9303892 Cmo02g00060 Cmo-Chr2:309781 5.39E-71 wgd
Cmo02g00060 Cmo-Chr2:309781 Cmo20g00257 Cmo-Chr20:1256481 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9181 PF00847 AP2 4.80E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00060 - - csv:101221933 822.387