Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00060 | ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATGTCTCGGAGGCGCTCTGGCGGTTGGAAATTAGCGATAATCAAGATGGAGGCGACGCGGCAGAATCAAGCCCTTACCCCGATCGTCCTGGCGAACCTGATTGCTTGTATTATATGAGAACTGGCTCTTGTAGCTATGGAAGTAATTGTCGCTTCAATCATCCTGTCTACGTTGCTCAGGGTGCTCTTTATAATGGGGAATTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCGTGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTCAACATTTTAGGTCTTCCCATGCGACAGGAAGAAAAGTCGTGTTCTTATTATTTGCGCACGGGATCATGTAAATTTGGAGTTTCATGCAAGTTTAATCATCCCCAGCCAGCACCAGTTGGGAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTAGTGGAATTCCTGCTTGGTCATTGCCTAGAGTGCAATATATGCCTGGTCCATGTGTACAAGGGCAACAATCTTATGTGCCTGTCCTGGTTTCTCCACCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTATGTGAGCAATGTCAGTCCTGTTCTTCCCAACCTTGGTTATAATTCTGTCAATTTGGAAGACTCGCATTCTAATGGGCAGTTGGCTTTATCAACATCAACTCTAACGCTACCCGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTTCATCATCCGAAACAAAGAATTGCACAATCAGCAACGAATGTGCTTGGGCTTCCTTCAAGACCGGGGCAAGCTGTATGTTCATACTACAGTATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAACTATGGCTTCACTCTGCCTGTGCTCAATTCATCTTTCATGAAGTATCCTAGCAACAACTATACGTTGTCATCGCACGATACCTTGCCCCAGACGATATCCAAATCGTCTGAATGGGTTCAGAAAGCTGATCCTCCGAACAACAAACAGCAAACCACCGATACGAAAGTGGATGATGGCACAGCTGAAGAGGTTTCCTCTGTTTCATGCTCATTATCAGTATGTTGTCAAGGAATTACAAATTTTCTTTACTTTATACCTCCCCTATGCCCCAATTTCACCTGTGATAATGTGGGAGTGAAAACAAGTTGCATGGAGATTTGTTTACTTGAGTCATCTGTTGTGGGGCAGGGGAAGGCATTTTTTGTGTTGAATAAAGTGCAGGTTGGAGGCGAAGAAGAGGAAGAAGAAGAACAAGAAGAAAAAAACCAGAGACAAAAATGGAGGTTCAAAATTGACAGTCCGATTCGAAAGGAGTCTCATTTCGGTTCGAAGATTTTTCCTCTTTCATCCATGCGGCGAGGCAGGCCCTCAGATCCATTTACAGCGACAGAAGTGCCGAAATCTACCGTTCAGCGCGAGAATCCTCTCAAAGAGATCCGATACCGAGGCGTTCGGAAGCGTCCTTGGGGAAGATACGCCGCGGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTTGATTCTGCTGAAGAGGCTGCTCGTGCTTACGATACTGCTGCTCGGTCCCTCCGTGGAGCCAAGGCCAAAACTAACTTTCCTTTACATCCATCGACGATTTCGATTCAGCAACCTATTCCGTTTTATCAATCGCCGCCGGATTTGATCGATTCGAACGGTTTTGGCAAGATTGAGTGTGTCCAGGCTAATAGGCCTACGTCGAGCAGCTTGAGTTCCACTGTTGAGTCGTTTAGTGGGCCGCGGATTTCTAACCCTTTGTCGTCGTTGTCGATGGTTCCCCGGAGGCCGGTGCAGCCTGTTTCGCCCGACGACTGCCACAGCGACTGTGATTCCTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTTCTCGCTTCTTTCCGTAGAGCCTTGCCGTTCGATCTTAACTTACCACCTCCCATGGACGTCGTGGATTTAACTGGTGATGATCTTCAAGCTACTGCTTTATGCCTCTGA | 2223 | 46.74 | MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCSYYLRTGSCKFGVSCKFNHPQPAPVGNMLPQARPGALGSAGTPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVSNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSSVSCSLSVCCQGITNFLYFIPPLCPNFTCDNVGVKTSCMEICLLESSVVGQGKAFFVLNKVQVGGEEEEEEEQEEKNQRQKWRFKIDSPIRKESHFGSKIFPLSSMRRGRPSDPFTATEVPKSTVQRENPLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDTAARSLRGAKAKTNFPLHPSTISIQQPIPFYQSPPDLIDSNGFGKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVPRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL | 740 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 309781 | 317857 | - | CmoCh02G000600.1 | Cmo02g00060 | 375657 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00060 | 740 | ProSiteProfiles | AP2/ERF domain profile. | 552 | 609 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00060 | 740 | MobiDBLite | consensus disorder prediction | 670 | 695 | - | - | |
Cmo02g00060 | 740 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | ProSiteProfiles | Zinc finger C3H1-type profile. | 319 | 347 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 116 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | SMART | c3hfinal6 | 88 | 115 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | SMART | c3hfinal6 | 276 | 303 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | SMART | c3hfinal6 | 319 | 346 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | CDD | AP2 | 552 | 609 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00060 | 740 | SMART | rav1_2 | 552 | 615 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00060 | 740 | ProSiteProfiles | Zinc finger C3H1-type profile. | 276 | 304 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cmo02g00060 | 740 | SUPERFAMILY | CCCH zinc finger | 93 | 117 | IPR036855 | GO:0046872 | |
Cmo02g00060 | 740 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 | 7 | 404 | - | - | |
Cmo02g00060 | 740 | SUPERFAMILY | CCCH zinc finger | 319 | 344 | IPR036855 | GO:0046872 | |
Cmo02g00060 | 740 | Gene3D | - | 272 | 353 | - | - | |
Cmo02g00060 | 740 | Gene3D | - | 43 | 121 | - | - | |
Cmo02g00060 | 740 | Gene3D | AP2/ERF domain | 551 | 611 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo02g00060 | 740 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmo02g00060 | 740 | Gene3D | - | 122 | 170 | - | - | |
Cmo02g00060 | 740 | SUPERFAMILY | CCCH zinc finger | 279 | 304 | IPR036855 | GO:0046872 | |
Cmo02g00060 | 740 | SUPERFAMILY | CCCH zinc finger | 132 | 161 | IPR036855 | GO:0046872 | |
Cmo02g00060 | 740 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 160 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 278 | 303 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 321 | 345 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 115 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 72 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | SUPERFAMILY | CCCH zinc finger | 51 | 73 | IPR036855 | GO:0046872 | |
Cmo02g00060 | 740 | PANTHER | PROTEIN PHOSPHATASE RELATED | 7 | 404 | - | - | |
Cmo02g00060 | 740 | Pfam | AP2 domain | 552 | 601 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00060 | 740 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872 | |
Cmo02g00060 | 740 | MobiDBLite | consensus disorder prediction | 389 | 411 | - | - | |
Cmo02g00060 | 740 | PRINTS | Ethylene responsive element binding protein signature | 575 | 591 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00060 | 740 | PRINTS | Ethylene responsive element binding protein signature | 553 | 564 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00060 | 740 | SUPERFAMILY | DNA-binding domain | 552 | 610 | IPR016177 | GO:0003677 | |
Cmo02g00060 | 740 | MobiDBLite | consensus disorder prediction | 389 | 406 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00060 | Cmo20g00257 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00060 | Cmo-Chr2:309781 | Cmo20g00258 | Cmo-Chr20:1266321 | 8.68E-123 | dispersed | |
Cmo09g00840 | Cmo-Chr9:4302114 | Cmo02g00060 | Cmo-Chr2:309781 | 9.75E-32 | dispersed | |
Cmo11g00260 | Cmo-Chr11:1283170 | Cmo02g00060 | Cmo-Chr2:309781 | 1.66E-19 | dispersed | |
Cmo13g00650 | Cmo-Chr13:6895551 | Cmo02g00060 | Cmo-Chr2:309781 | 1.42E-30 | dispersed | |
Cmo19g01154 | Cmo-Chr19:9711397 | Cmo02g00060 | Cmo-Chr2:309781 | 1.04E-09 | transposed | |
Cmo11g02018 | Cmo-Chr11:13773470 | Cmo02g00060 | Cmo-Chr2:309781 | 2.13E-68 | wgd | |
Cmo19g01079 | Cmo-Chr19:9303892 | Cmo02g00060 | Cmo-Chr2:309781 | 5.39E-71 | wgd | |
Cmo02g00060 | Cmo-Chr2:309781 | Cmo20g00257 | Cmo-Chr20:1256481 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9181 | PF00847 | AP2 | 4.80E-13 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00060 | - | - | csv:101221933 | 822.387 |