Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00082 | ATGGAGGATCAGCGAGATGATGTTGCACAATCAGAGCAAGGGCCTTCCAATGCTACCTGGTGGTCTTCTGATTTCGTGGAGAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATACTGTAAGTGAAAAGGAAGAGCTCATCAATTCTGACCAAGATGCGTTGTTGTCGCCTCAAAGAGCATCTCAAATTCTCTGGCGTACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTCTGTTATTCCGGACAAAAGGCTAAAAGAGCAGTTTCACAATATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAAAAACGATGTTATTCTTGTGGAGACGGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCAAATCCAGCCGCAATTATCAAGAAGATCGCAGGACTGGTTTCTGACTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCCGCTGTAGAAGAAACCTCCCACTTGTTTGACGATAGAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCATGCCGTCCAAGAGCCATCTTATTTAAGTCTCTGGCAGACACAGTAGGGCTCGAAAGCCGTCTCATGGTGGGCTTGCCAAATGAGGGGGCTATTGGGTGCGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTCGTTGATCTTATGCGATTTCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTTATGACTCATATTTCTGCTGCTGGGGAAAGTGATTCTGCAGAAAACGACTCCTGTGATTCACCTCTGGAACCTAATAGTCCTCTTTATGGGTTCTCAGAGAGAGTTGATCCCGACAGTGTTGAAAAAGATGAGAGCCTTCAATTCCACAGAAAATTTGATGCAGCTTCTAATGCATATGGTCCTAAATTGCGCAACTGGATGTTGCGTTCAAGTACAACACTTGACAGCAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGTGGCCGGTCCATGCTTAGTGGGGATAGGAAAGTCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGCGCTTCAACTTCAGAAGCACGTCGAATAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGACTGTGCGAGCAATGAATGAAACAATGAAGCAAAATCGTCTTTTGAGAGGACAAACAGATGACAGGTCGTTCTCCCACCCTTCAAATGAACGAAATAGTAGTTCAGATGTTCGGAGAAATGATCCATTGGGTTCTCAAAGAGCAATATCATTACCAACATCGCCACATGAGTATAGGGGTCAAACCTCTGATAGAAGTGAACATTCGGCATTTGCGAATGATGATTTAGCCTCAAAATGGACTAAAGTTCTTGAATCTTTCTCCATGAACGACAAACCACTATTACCTTACCCAGAATGGAACATTGATTACTCAGAACTCACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGAACAGATGTGGCGATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAATGAGATATTAATTCTTAGTCGTCTTCGACATCCTAATGTTTTATTGTTTCTGGGTGCATGCACAAAGCCGCCACGATTGTCAATGGTCAGTGAATACATGGAAATGGGCTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAAAAAAAACTAAGCTGGCGGAGAAGACTAAAGATGTTACGTGACATATGCAGGGGTTTGATGTGCATACATCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAGCATTGGACTGTCAAGATATGTGATTTTGGACTTTCAAGAGTATTGACTGAGGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCCGAGCTCTTCCGAAACGAACCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACGCTAAGTAGACCGTGGGAGGGTGTTCCACAAGAGCGGGTAGTTTATGCTGTTGGCACCGAGGGAGCACGCCTAGAGATTCCTGAAGGACCCCTTGGCAGACTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTCGACTGCGAGTACTCGCTTTCTTGA | 2391 | 43.87 | MEDQRDDVAQSEQGPSNATWWSSDFVEKFGSVSLGPREDTVSEKEELINSDQDALLSPQRASQILWRTGMLCEPIPDGFYSVIPDKRLKEQFHNIPSLDELRALEAEGYKNDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAAVEETSHLFDDRGIQLLGQIKFGSCRPRAILFKSLADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSVEKDESLQFHRKFDAASNAYGPKLRNWMLRSSTTLDSKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKVFRDFSDDVSTSRSDGASTSEARRIRRRSISITPEIGDDIVRTVRAMNETMKQNRLLRGQTDDRSFSHPSNERNSSSDVRRNDPLGSQRAISLPTSPHEYRGQTSDRSEHSAFANDDLASKWTKVLESFSMNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEILILSRLRHPNVLLFLGACTKPPRLSMVSEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRVLTEAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWEGVPQERVVYAVGTEGARLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS | 796 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 423661 | 431438 | - | CmoCh02G000820.1 | Cmo02g00082 | 375679 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00082 | 796 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 59 | 254 | - | - | |
Cmo02g00082 | 796 | ProSitePatterns | Protein kinases ATP-binding region signature. | 546 | 567 | IPR017441 | GO:0005524 | |
Cmo02g00082 | 796 | MobiDBLite | consensus disorder prediction | 471 | 492 | - | - | |
Cmo02g00082 | 796 | SMART | serkin_6 | 540 | 789 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00082 | 796 | MobiDBLite | consensus disorder prediction | 442 | 502 | - | - | |
Cmo02g00082 | 796 | Gene3D | Transferase(Phosphotransferase) domain 1 | 619 | 795 | - | - | |
Cmo02g00082 | 796 | MobiDBLite | consensus disorder prediction | 398 | 417 | - | - | |
Cmo02g00082 | 796 | SUPERFAMILY | Protein kinase-like (PK-like) | 517 | 788 | IPR011009 | - | |
Cmo02g00082 | 796 | Pfam | Protein tyrosine and serine/threonine kinase | 541 | 788 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo02g00082 | 796 | MobiDBLite | consensus disorder prediction | 447 | 470 | - | - | |
Cmo02g00082 | 796 | MobiDBLite | consensus disorder prediction | 362 | 384 | - | - | |
Cmo02g00082 | 796 | Gene3D | Phosphorylase Kinase; domain 1 | 533 | 618 | - | - | |
Cmo02g00082 | 796 | CDD | STKc_MAP3K-like | 546 | 788 | - | - | |
Cmo02g00082 | 796 | ProSiteProfiles | Protein kinase domain profile. | 540 | 795 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00082 | 796 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 30 | 794 | - | - | |
Cmo02g00082 | 796 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 659 | 671 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo02g00082 | 796 | PANTHER | MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED | 30 | 794 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00082 | Cmo20g00235 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00082 | Cmo-Chr2:423661 | Cmo01g01773 | Cmo-Chr1:13120602 | 3.89E-75 | dispersed | |
Cmo02g00082 | Cmo-Chr2:423661 | Cmo20g00235 | Cmo-Chr20:1141319 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74081 | PF07714 | PK_Tyr_Ser-Thr | 6.20E-58 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00082 | - | - | csv:101220859 | 1466.44 |