Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00084 ATGATTCGTCTTCGTTTCTGGGTCGATCGTGTTTTTGTTCTGATTGATGGTATTGTTCATTTGGAGCTGAAGAATCTGATGGGGAGCAAGCAATTGGATTTAAATCAGCCGTTTCTGTCGGTGAGGCGTGTTTCATCGATCGAAACATCATCGAAAGCGAACGAGCTAGCGAGAACGGATAATCGCTGGCTGCATCTTCCTGTCTACAAGTCTGAATTGAAATCTGGGCCGGTATCGAATCCGGGGAGTGTTCCTTTTGTATGGGAGCATTCCCCAGGAAAGCCCAAGGATGGTAGAGAATCACAAACCATAGGTTTGATACCGTGTTCGGCTGCCCCGACACAACCTCCAGGGACGTCTTCAGATTCAAATCATCTTTGTAGCACAGGAGGAGGAGATGATTACCATTCTCATAAAAGCATTGTTAGATTTATGTCCTTGAGGGAGACGTTTGAGAGGGATTCAAGTTTTGATTCGGACAACAATGGTGACGGTGACGGTGACAAGACTTATCTCGAAGCAAACGACACCCTTTCGAGATCTAAGTCATTCTCGATGAACTGTAGTGAAACTGGTTCGAGTGGATTGGATGGTGGTGATGTTAAGCCATCAGGAACGTTCTTAAAAGATCAGCAAACTCATGAGCTCATGATGGGAAGATTCCTGCCTGCTGCCAAGGCATTGGCTTCAGAAACATCTCAAGTTGTTCATCATAGGAAGAAAAATGTTCAAAGAGTGCAGCAGAGAGAAGCAAGGAAAATTGTAGAAATCGATATCGAGCACGGAGTAAATTCGCTTCCAACGACATTGCCATTGAATTACGCTCCTCCGAATACTCACGACGAAGAAACTAGCAAAGATGAAGATATTGATCTTGATGAACCTGAATACTCAGCTACTAAAGCTCGTCGGTTCCTCGCTCGTTTTTGCTTGAGTGGTTCCTTTGGCCTTCGGCATCATCGAGTTCCCGGGATGAGAAGGCAACGCTCTGCAGCAGCTTGTGGAGTTCATTTGGATTCTTCTCCTCGACATGTCCAGCCTTCAAAGGTTGAAGGTGAGACCAAAAGCTTGAGCTCTACAAGTATGGAGTCTAGTGGTTCATGTTCGTCTTGTTCCGATGCAAACTCAAACCCGAATGCTACAGTATTAGGAAGCCTTCATCATGAAAAATCAAGTCAAGAAGCAATCTCAGATGATTCTTCTCAGGACTTTGTGTCGTTCACAAGTTCAGAAGCTTCTAACAAAGTGCCAAAGGGATCACATGTTGAACAGAACACTAAAGGCCATAACCATTGTCATGAAGCCTCGGCTCGGGGAAGAACCGATCTCGCAAGCGCTCGTTGCAGAAAAAGTTCTGTGCCCATTTCTTCACAACGTGAGCTTTCTCCTCCTCTACCGAGATCCCCATCGGAGTCTTGGCTTAAGCGCACGTTGTCCACCATTGTCTTGAAACTCGACTCGACATGA 1467 45.67 MIRLRFWVDRVFVLIDGIVHLELKNLMGSKQLDLNQPFLSVRRVSSIETSSKANELARTDNRWLHLPVYKSELKSGPVSNPGSVPFVWEHSPGKPKDGRESQTIGLIPCSAAPTQPPGTSSDSNHLCSTGGGDDYHSHKSIVRFMSLRETFERDSSFDSDNNGDGDGDKTYLEANDTLSRSKSFSMNCSETGSSGLDGGDVKPSGTFLKDQQTHELMMGRFLPAAKALASETSQVVHHRKKNVQRVQQREARKIVEIDIEHGVNSLPTTLPLNYAPPNTHDEETSKDEDIDLDEPEYSATKARRFLARFCLSGSFGLRHHRVPGMRRQRSAAACGVHLDSSPRHVQPSKVEGETKSLSSTSMESSGSCSSCSDANSNPNATVLGSLHHEKSSQEAISDDSSQDFVSFTSSEASNKVPKGSHVEQNTKGHNHCHEASARGRTDLASARCRKSSVPISSQRELSPPLPRSPSESWLKRTLSTIVLKLDST 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 434986 437084 + CmoCh02G000840.1 Cmo02g00084 375681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00084 488 PANTHER N-METHYLTRANSFERASE, PUTATIVE (DUF688)-RELATED 360 481 - -
Cmo02g00084 488 MobiDBLite consensus disorder prediction 410 471 - -
Cmo02g00084 488 PANTHER N-METHYLTRANSFERASE, PUTATIVE (DUF688)-RELATED 27 341 - -
Cmo02g00084 488 MobiDBLite consensus disorder prediction 183 202 - -
Cmo02g00084 488 MobiDBLite consensus disorder prediction 111 132 - -
Cmo02g00084 488 MobiDBLite consensus disorder prediction 268 292 - -
Cmo02g00084 488 MobiDBLite consensus disorder prediction 111 130 - -
Cmo02g00084 488 Pfam Protein of unknown function (DUF688) 27 402 IPR007789 -
Cmo02g00084 488 MobiDBLite consensus disorder prediction 450 465 - -
Cmo02g00084 488 PANTHER N-METHYLTRANSFERASE, PUTATIVE (DUF688)-RELATED 27 341 - -
Cmo02g00084 488 MobiDBLite consensus disorder prediction 333 374 - -
Cmo02g00084 488 MobiDBLite consensus disorder prediction 422 445 - -
Cmo02g00084 488 PANTHER N-METHYLTRANSFERASE, PUTATIVE (DUF688)-RELATED 360 481 - -
Cmo02g00084 488 MobiDBLite consensus disorder prediction 351 374 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00084 Cmo11g01880 CCT
Cmo02g00084 Cmo19g00929 CCT
Cmo02g00084 Cmo19g00929 ECH
Cmo02g00084 Cmo11g01880 ECH
Cmo02g00084 Cmo20g00234 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00084 Cmo-Chr2:434986 Cmo11g01972 Cmo-Chr11:13565929 5.23E-45 dispersed
Cmo19g01057 Cmo-Chr19:9174264 Cmo02g00084 Cmo-Chr2:434986 1.65E-62 wgd
Cmo02g00084 Cmo-Chr2:434986 Cmo20g00234 Cmo-Chr20:1134519 6.29E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00084 - - cmos:111451153 872.848