Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00098 ATGGGCTGTATCTGTTCTAAGGTTCTAGCGGATGAGTGTAGTGACCAGGAATATGATATCTCCACAAGAGCTTATTCCGCCAGGAATCATCTCTCTGAATTGAAAATTTCAGGAGCTGGCTCTCTGAAACTGGAGAAGAATTGGGAAAATGATAGACTGGATTGTGGTGATGTTAAAGTTATGTTGTTTGATACGAAGGTAAATGGTGAAGTTCCTGAGATCCCTGATGCTACCATTGTCAATCATCCATGTATGGGAAAGATTCCAAAGGCTACTGAGGCCGAGCAGGTCGCTGCCGGGTGGCCGAGTTGGCTGGCTACGACGGCTGGTGAGGCTATCAAAGACTGGTTGCCAAAACGTGCAAGTAACTTCGTCAAGCTAGAGAAAATTGGGCAGGGAACTTATAGCAGTGTGTATAAAGCTCGTGATATCGTTCGAGATAAAGTTGTGGCGTTGAAAAGGGTCACGTTCGACAATCAAGATACCGAGAGTATCAAGTTTATGGCTAGGGAAATCCTTGTTTTGCGAAGGCTTGATCATCCAAATATAGTTAAGTTGGAAGGTTTGATCATATCACAAGCATCATGTACCATGTATCTTGTTTTTGAATATATGGAACATGATCTTACTGGACTTGCATCACGCCCTGGCACGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGATCACTGTCACAGCAATGGGGTTTTGCATCGAGACATAAAGGGCTCGAATCTTCTTATCGACAACAATGGCGTTTTGAAGATAGCAGATTTCGGGTTGTCAGTTTTCTTTGATTCACAGTCGACAGTTCCCATGACGAGTCGTGTAGTAACTCTCTGGTATCGACCACCGGAGCTTTTACTCGGAGCATCTCAATATGGAGCTGAAGTTGATTTATGGAGTGCTGGTTGCATTCTAGGAGAGTTATATACAGGCAAGCCTATCTTGCCAGGAAAAACAGAGGTTGAACAACTACACAAGATATTTAAGCTATGTGGTTCCCCCTCCAAGGAATATTGGAACAATTCGCACTTGAAGCATTCAGCAAGCATGAAGCCTCCACAGGCGTACGAAAGATGTCTTCGAGAACGATATAACGATTTGCCTCGTGCTGCTGTTGAGCTTATGGACACTTTGCTGTCTATCGATCCTGCAGGGCGAGGAACTGCGGCGTCTGCACTCAACAGTGAGTTCTTTACCACGAGGCCATTACCATGCGATCCTTCAAGTTTGCCAAAATACCCTCCCAGCAAAGAGATCGACTCGAAAATGCGCGAAGAGGAAGCAAGGAGGCAACGAGGAGTAGTCGGTGGAAAAAACCGAACAATTGACTCGGAAACGAAAGGACTGAAGCAATCACGGGTGGTTCCTTCAGCTAAGGCGAACCCTGAGTTGGTTATGTCACTATTGAGAAAACAAAGTCGTTCGAGCTCGACGTGTTCTTACAGTTTGGTGTCCAAGAGAACCTCAAATTCAGGACCTATAACTCAGGGACCAAGATTTCCAAAGTCCAAAAGGGAGAAACATGTTTCTACGATTCCGAGCGAGTATCTAACGTCGTCTGGTTCTATTGAATTTGCTTCTTACAAACATGTCGAAGAAGGAAAGCGAGTTCCAAAGCCAGAATCGTCGAGTAAAGACAAAAGCTCCACAGACGAGCTCATCAAAAAGCTGCACAGAGACCAACTTGGCTCTTGTAAGTTGGAACATTCAAAAGCGTCAGCTCTGATAGTTAGCTAA 1767 44.88 MGCICSKVLADECSDQEYDISTRAYSARNHLSELKISGAGSLKLEKNWENDRLDCGDVKVMLFDTKVNGEVPEIPDATIVNHPCMGKIPKATEAEQVAAGWPSWLATTAGEAIKDWLPKRASNFVKLEKIGQGTYSSVYKARDIVRDKVVALKRVTFDNQDTESIKFMAREILVLRRLDHPNIVKLEGLIISQASCTMYLVFEYMEHDLTGLASRPGTSFTEPQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGVLKIADFGLSVFFDSQSTVPMTSRVVTLWYRPPELLLGASQYGAEVDLWSAGCILGELYTGKPILPGKTEVEQLHKIFKLCGSPSKEYWNNSHLKHSASMKPPQAYERCLRERYNDLPRAAVELMDTLLSIDPAGRGTAASALNSEFFTTRPLPCDPSSLPKYPPSKEIDSKMREEEARRQRGVVGGKNRTIDSETKGLKQSRVVPSAKANPELVMSLLRKQSRSSSTCSYSLVSKRTSNSGPITQGPRFPKSKREKHVSTIPSEYLTSSGSIEFASYKHVEEGKRVPKPESSSKDKSSTDELIKKLHRDQLGSCKLEHSKASALIVS 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 523545 526604 - CmoCh02G000980.1 Cmo02g00098 375695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00098 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Cmo02g00098 588 Gene3D Phosphorylase Kinase; domain 1 110 206 - -
Cmo02g00098 588 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Cmo02g00098 588 PANTHER CELL DIVISION PROTEIN KINASE 72 558 - -
Cmo02g00098 588 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 72 558 - -
Cmo02g00098 588 MobiDBLite consensus disorder prediction 489 507 - -
Cmo02g00098 588 CDD STKc_CDK9_like 124 408 - -
Cmo02g00098 588 MobiDBLite consensus disorder prediction 427 446 - -
Cmo02g00098 588 Gene3D Transferase(Phosphotransferase) domain 1 207 446 - -
Cmo02g00098 588 SMART serkin_6 124 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00098 588 ProSiteProfiles Protein kinase domain profile. 124 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00098 588 Pfam Protein kinase domain 124 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00098 588 MobiDBLite consensus disorder prediction 415 452 - -
Cmo02g00098 588 MobiDBLite consensus disorder prediction 541 562 - -
Cmo02g00098 588 SUPERFAMILY Protein kinase-like (PK-like) 119 416 IPR011009 -
Cmo02g00098 588 MobiDBLite consensus disorder prediction 489 518 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00098 Cmo11g01960 CCT
Cmo02g00098 Cmo19g01029 CCT
Cmo02g00098 Cmo19g01029 ECH
Cmo02g00098 Cmo11g01960 ECH
Cmo02g00098 Cmo20g00222 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00098 Cmo-Chr2:523545 Cmo04g00583 Cmo-Chr4:2911153 0 dispersed
Cmo02g00098 Cmo-Chr2:523545 Cmo20g00222 Cmo-Chr20:1063611 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74083 PF00069 Pkinase 2.70E-69 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00098 - - bhj:120088593 895.575