Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00098 | ATGGGCTGTATCTGTTCTAAGGTTCTAGCGGATGAGTGTAGTGACCAGGAATATGATATCTCCACAAGAGCTTATTCCGCCAGGAATCATCTCTCTGAATTGAAAATTTCAGGAGCTGGCTCTCTGAAACTGGAGAAGAATTGGGAAAATGATAGACTGGATTGTGGTGATGTTAAAGTTATGTTGTTTGATACGAAGGTAAATGGTGAAGTTCCTGAGATCCCTGATGCTACCATTGTCAATCATCCATGTATGGGAAAGATTCCAAAGGCTACTGAGGCCGAGCAGGTCGCTGCCGGGTGGCCGAGTTGGCTGGCTACGACGGCTGGTGAGGCTATCAAAGACTGGTTGCCAAAACGTGCAAGTAACTTCGTCAAGCTAGAGAAAATTGGGCAGGGAACTTATAGCAGTGTGTATAAAGCTCGTGATATCGTTCGAGATAAAGTTGTGGCGTTGAAAAGGGTCACGTTCGACAATCAAGATACCGAGAGTATCAAGTTTATGGCTAGGGAAATCCTTGTTTTGCGAAGGCTTGATCATCCAAATATAGTTAAGTTGGAAGGTTTGATCATATCACAAGCATCATGTACCATGTATCTTGTTTTTGAATATATGGAACATGATCTTACTGGACTTGCATCACGCCCTGGCACGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGATCACTGTCACAGCAATGGGGTTTTGCATCGAGACATAAAGGGCTCGAATCTTCTTATCGACAACAATGGCGTTTTGAAGATAGCAGATTTCGGGTTGTCAGTTTTCTTTGATTCACAGTCGACAGTTCCCATGACGAGTCGTGTAGTAACTCTCTGGTATCGACCACCGGAGCTTTTACTCGGAGCATCTCAATATGGAGCTGAAGTTGATTTATGGAGTGCTGGTTGCATTCTAGGAGAGTTATATACAGGCAAGCCTATCTTGCCAGGAAAAACAGAGGTTGAACAACTACACAAGATATTTAAGCTATGTGGTTCCCCCTCCAAGGAATATTGGAACAATTCGCACTTGAAGCATTCAGCAAGCATGAAGCCTCCACAGGCGTACGAAAGATGTCTTCGAGAACGATATAACGATTTGCCTCGTGCTGCTGTTGAGCTTATGGACACTTTGCTGTCTATCGATCCTGCAGGGCGAGGAACTGCGGCGTCTGCACTCAACAGTGAGTTCTTTACCACGAGGCCATTACCATGCGATCCTTCAAGTTTGCCAAAATACCCTCCCAGCAAAGAGATCGACTCGAAAATGCGCGAAGAGGAAGCAAGGAGGCAACGAGGAGTAGTCGGTGGAAAAAACCGAACAATTGACTCGGAAACGAAAGGACTGAAGCAATCACGGGTGGTTCCTTCAGCTAAGGCGAACCCTGAGTTGGTTATGTCACTATTGAGAAAACAAAGTCGTTCGAGCTCGACGTGTTCTTACAGTTTGGTGTCCAAGAGAACCTCAAATTCAGGACCTATAACTCAGGGACCAAGATTTCCAAAGTCCAAAAGGGAGAAACATGTTTCTACGATTCCGAGCGAGTATCTAACGTCGTCTGGTTCTATTGAATTTGCTTCTTACAAACATGTCGAAGAAGGAAAGCGAGTTCCAAAGCCAGAATCGTCGAGTAAAGACAAAAGCTCCACAGACGAGCTCATCAAAAAGCTGCACAGAGACCAACTTGGCTCTTGTAAGTTGGAACATTCAAAAGCGTCAGCTCTGATAGTTAGCTAA | 1767 | 44.88 | MGCICSKVLADECSDQEYDISTRAYSARNHLSELKISGAGSLKLEKNWENDRLDCGDVKVMLFDTKVNGEVPEIPDATIVNHPCMGKIPKATEAEQVAAGWPSWLATTAGEAIKDWLPKRASNFVKLEKIGQGTYSSVYKARDIVRDKVVALKRVTFDNQDTESIKFMAREILVLRRLDHPNIVKLEGLIISQASCTMYLVFEYMEHDLTGLASRPGTSFTEPQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGVLKIADFGLSVFFDSQSTVPMTSRVVTLWYRPPELLLGASQYGAEVDLWSAGCILGELYTGKPILPGKTEVEQLHKIFKLCGSPSKEYWNNSHLKHSASMKPPQAYERCLRERYNDLPRAAVELMDTLLSIDPAGRGTAASALNSEFFTTRPLPCDPSSLPKYPPSKEIDSKMREEEARRQRGVVGGKNRTIDSETKGLKQSRVVPSAKANPELVMSLLRKQSRSSSTCSYSLVSKRTSNSGPITQGPRFPKSKREKHVSTIPSEYLTSSGSIEFASYKHVEEGKRVPKPESSSKDKSSTDELIKKLHRDQLGSCKLEHSKASALIVS | 588 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 523545 | 526604 | - | CmoCh02G000980.1 | Cmo02g00098 | 375695 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00098 | 588 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 244 | 256 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo02g00098 | 588 | Gene3D | Phosphorylase Kinase; domain 1 | 110 | 206 | - | - | |
Cmo02g00098 | 588 | ProSitePatterns | Protein kinases ATP-binding region signature. | 130 | 153 | IPR017441 | GO:0005524 | |
Cmo02g00098 | 588 | PANTHER | CELL DIVISION PROTEIN KINASE | 72 | 558 | - | - | |
Cmo02g00098 | 588 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 72 | 558 | - | - | |
Cmo02g00098 | 588 | MobiDBLite | consensus disorder prediction | 489 | 507 | - | - | |
Cmo02g00098 | 588 | CDD | STKc_CDK9_like | 124 | 408 | - | - | |
Cmo02g00098 | 588 | MobiDBLite | consensus disorder prediction | 427 | 446 | - | - | |
Cmo02g00098 | 588 | Gene3D | Transferase(Phosphotransferase) domain 1 | 207 | 446 | - | - | |
Cmo02g00098 | 588 | SMART | serkin_6 | 124 | 408 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00098 | 588 | ProSiteProfiles | Protein kinase domain profile. | 124 | 408 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00098 | 588 | Pfam | Protein kinase domain | 124 | 408 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00098 | 588 | MobiDBLite | consensus disorder prediction | 415 | 452 | - | - | |
Cmo02g00098 | 588 | MobiDBLite | consensus disorder prediction | 541 | 562 | - | - | |
Cmo02g00098 | 588 | SUPERFAMILY | Protein kinase-like (PK-like) | 119 | 416 | IPR011009 | - | |
Cmo02g00098 | 588 | MobiDBLite | consensus disorder prediction | 489 | 518 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00098 | Cmo11g01960 | CCT | |
Cmo02g00098 | Cmo19g01029 | CCT | |
Cmo02g00098 | Cmo19g01029 | ECH | |
Cmo02g00098 | Cmo11g01960 | ECH | |
Cmo02g00098 | Cmo20g00222 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00098 | Cmo-Chr2:523545 | Cmo04g00583 | Cmo-Chr4:2911153 | 0 | dispersed | |
Cmo02g00098 | Cmo-Chr2:523545 | Cmo20g00222 | Cmo-Chr20:1063611 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74083 | PF00069 | Pkinase | 2.70E-69 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00098 | - | - | bhj:120088593 | 895.575 |