Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00105 ATGCTCACGCAAATGCACCTCCTTCTCCCCCGCCGTGGCTTTGGCCTCATTGGGGCTATTTTCTTTGCCATGGCCGTCCTTGAGTGGTTCACGGCGGTGGCTCAGCTCCAACACCGTGTGCTGGATCTACATTGGCTTCCTGCTACCGCCACGTGGTACGGAAGCCCCGAGGGCGACGGTAGCGACGGTGGAGCATGTGGGTATGGAAATTTAGTGGATGTGAGGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAATTCTGTTCAAAAACGGTGAAGGGTGTGGAGCATGTTACAAGGTGAAATGTCTAGACCAGAGGATTTGCTCTAGACGAGCCGTTACTGTAATCATCACCGACGAATGCCCCGGTGGGTATTGTTCTAATGGAAATACCCACTTCGATCTCAGCGGCGCCGCCTTTGGCCGTATGGCCATCGCCGGCGAAGGTGGGCAGCTCAGAAACAGAGGAGAAATCCCAGTAATTTACCGACGAACTCCCTGTAAGTATCGAGGCAAGAACATTGCCTTCCACGTCAATGAAGGCTCCACAGAATACTGGCTCTCTGTCTTGGTTGAATTCGAGGATGGGGATGGAGACATCGGTGCAATGCAAATAAAAGAAGGGAACTCGAGGGAGTGGCTGGAAATGAAGCATTTATGGGGAGCAAACTGGTGCATAATTGGAGGGCCTTTAAAGGGTCCATTTTCAGTGAGATTAACGACATTATCTACGGGAAGAACAGTGGCAGCTAGGGATATAATTCCGAGGAATTGGTCTCCAAAGGCCACTTACACTTCCCGCCTTAATTTCTTCTCTTGA 822 51.46 MLTQMHLLLPRRGFGLIGAIFFAMAVLEWFTAVAQLQHRVLDLHWLPATATWYGSPEGDGSDGGACGYGNLVDVRPLKARVGAVSPILFKNGEGCGACYKVKCLDQRICSRRAVTVIITDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPVIYRRTPCKYRGKNIAFHVNEGSTEYWLSVLVEFEDGDGDIGAMQIKEGNSREWLEMKHLWGANWCIIGGPLKGPFSVRLTTLSTGRTVAARDIIPRNWSPKATYTSRLNFFS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 562403 564052 + CmoCh02G001050.1 Cmo02g00105 375702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00105 273 PANTHER EXPANSIN-B3 21 272 - -
Cmo02g00105 273 SUPERFAMILY Barwin-like endoglucanases 44 172 IPR036908 -
Cmo02g00105 273 SMART dpbb_1 81 163 IPR007112 -
Cmo02g00105 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 267 IPR007117 -
Cmo02g00105 273 Pfam Lytic transglycolase 83 162 IPR009009 -
Cmo02g00105 273 Pfam Expansin C-terminal domain 175 256 IPR007117 -
Cmo02g00105 273 Gene3D - 32 169 IPR036908 -
Cmo02g00105 273 Gene3D - 170 272 IPR036749 -
Cmo02g00105 273 PANTHER EXPANSIN-LIKE PROTEIN B1 21 272 - -
Cmo02g00105 273 SUPERFAMILY PHL pollen allergen 173 267 IPR036749 -
Cmo02g00105 273 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576|GO:0019953
Cmo02g00105 273 PRINTS Major pollen allergen Lol pI signature 123 138 IPR005795 GO:0005576|GO:0019953
Cmo02g00105 273 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Cmo02g00105 273 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Cmo02g00105 273 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Cmo02g00105 273 PRINTS Major pollen allergen Lol pI signature 243 260 IPR005795 GO:0005576|GO:0019953
Cmo02g00105 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 173 IPR007112 -
Cmo02g00105 273 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Cmo02g00105 273 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Cmo02g00105 273 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Cmo02g00105 273 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Cmo02g00105 273 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Cmo02g00105 273 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00105 Cmo11g01949 CCT
Cmo02g00105 Cmo20g00212 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00105 Cmo-Chr2:562403 Cmo06g00979 Cmo-Chr6:7713997 6.65E-79 dispersed
Cmo11g01949 Cmo-Chr11:13441695 Cmo02g00105 Cmo-Chr2:562403 3.30E-149 wgd
Cmo02g00105 Cmo-Chr2:562403 Cmo20g00212 Cmo-Chr20:1024601 1.62E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00105 K20628 - csv:101202998 489.96