Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00117 ATGGGGATCTGTTTGTCTACTGGCAATCAGTGTAGCTGCAATGGGGGAGCCAATGGAGAGAGGATTTCTGGATCCTGTTTGGGGATTAGAGTTTCTGGCCGGATTGAAAGAAAAAGAACATTTTCAGATCATACCTTTTCTATTCAGCATTTGAATTCTATACCGAATAGGCTTGTTTATAATGGGAAGACTCGAAATTCTTGCATTTTCACTCAGCAGGGTCGCAAGGGGATAAATCAGGATGCCATGGTTGTGTGGGAAGACTTCATATCAGATGGTGCAATTTTTTGTGGGGTATTTGATGGTCACGGCCCTCATGGTCATGTCGTTGCACGAAAGGTTAGAGATGTTCTTCCAAGAAAGCTGGAGTCATCCTGGGAGTCATCTCAGTTAAAGCATAACAGATCAGATAGAACTTCTTGTTTCCGGTGGAGTCAGAAGAATTCAGCAGATGGTGAACGACACGACATGGATGGCTCGCAGGAGGATAAATCAAGTTCTTTATGGAGAAAAGCTTTTCTCAAATCATATAAAGCCATGGATAAGGAGCTCAAATCTCATCCCAAAGTGGACTGTTTCTGCAGTGGTTGTACTGCGGTCACTCTGGTTAAGCAGGGTTCCGATCTATTCGTGGGAAGTATCGGGGATTCTCGAGCAATTCTCGGATCGAAAGATAGCAGTGATTCGCCTGTAGCAACCCAATTGACAGTAGATCTAAAGCCTGATTTACCCAGAGAAGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTGTTTGCATTGCAAGATGAGCCAGAAGTGCCAAGAGTGTGGCTGCCATTTGACAATGCACCTGGCTTAGCCATGGCTCGAGCGTTTGGCGACTTCTGTTTGAAGGACTATGGAGTTATCTCTATTCCCGAATTTTCGCACCGTGTACTTACAGATAACGATCTGTTTGTTGTCCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAACCAAGAGGTGGTTGAGATAGTTCATTCTGCCCCAACTCGCTCATCGGCAGCTCGGATGGTGGTAGACTCGGCTGCTCGTGAATGGAAGCTCAAGTACCCTACTTCAAAAATGGACGACTGTGCAGTCGTTTGCTTATTCTTGGACGGGAAAATGGATTCAAATTCAGAAAATGAAGAACAATCTCTTGCAACTCTTCAAACCGATGAAATGTATCACACGGAAAATTCAGATGAAGAGCAGAGGTTGGAGCCAAGTTTACAGAGGAACGATACGGTCCGATCATCGGAAGAAAAAGAGCAAATCGGAGGGCGATGTTCACAAAGCAAAGAGAATGGAGAATCAATCTGTGCTAAAGATGAGAATTGGTTAGGATTGGAGGGTGTAACAAGAGTAAACTCCCTGATTCAACTTCCTAGATTTTCTTGTACTAAGAACATAGTTGAAGAAGGTTTCTTCACACTGTCACCGCATGACAAAGGCAGCTCTGGAGAAGGGCAGGCAGGCTCATATGGCACAAACCCAGCTCCAAGACGTCAATATATCCCCGGTGGAGATGATAATTTCATTCCAAATCCTGGATTTGAGGTACCAATCCCAGCCAAGATTAGTGGTGTAAAAGAAACACCCTACCCTTGA 1614 44.67 MGICLSTGNQCSCNGGANGERISGSCLGIRVSGRIERKRTFSDHTFSIQHLNSIPNRLVYNGKTRNSCIFTQQGRKGINQDAMVVWEDFISDGAIFCGVFDGHGPHGHVVARKVRDVLPRKLESSWESSQLKHNRSDRTSCFRWSQKNSADGERHDMDGSQEDKSSSLWRKAFLKSYKAMDKELKSHPKVDCFCSGCTAVTLVKQGSDLFVGSIGDSRAILGSKDSSDSPVATQLTVDLKPDLPREAERIKKCKGRVFALQDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRVLTDNDLFVVLASDGVWDVLSNQEVVEIVHSAPTRSSAARMVVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSNSENEEQSLATLQTDEMYHTENSDEEQRLEPSLQRNDTVRSSEEKEQIGGRCSQSKENGESICAKDENWLGLEGVTRVNSLIQLPRFSCTKNIVEEGFFTLSPHDKGSSGEGQAGSYGTNPAPRRQYIPGGDDNFIPNPGFEVPIPAKISGVKETPYP 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 615738 623612 + CmoCh02G001170.1 Cmo02g00117 375714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00117 537 MobiDBLite consensus disorder prediction 482 520 - -
Cmo02g00117 537 CDD PP2Cc 72 373 IPR001932 -
Cmo02g00117 537 MobiDBLite consensus disorder prediction 398 436 - -
Cmo02g00117 537 Pfam Protein phosphatase 2C 152 350 IPR001932 -
Cmo02g00117 537 ProSiteProfiles PPM-type phosphatase domain profile. 66 373 IPR001932 -
Cmo02g00117 537 PANTHER ALPHABET, ISOFORM E-RELATED 1 461 - -
Cmo02g00117 537 Gene3D - 56 375 IPR036457 -
Cmo02g00117 537 SUPERFAMILY PP2C-like 60 375 IPR036457 -
Cmo02g00117 537 MobiDBLite consensus disorder prediction 485 499 - -
Cmo02g00117 537 MobiDBLite consensus disorder prediction 398 430 - -
Cmo02g00117 537 MobiDBLite consensus disorder prediction 142 163 - -
Cmo02g00117 537 SMART PP2C_4 55 371 IPR001932 -
Cmo02g00117 537 MobiDBLite consensus disorder prediction 148 163 - -
Cmo02g00117 537 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 461 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00117 Cmo11g01944 CCT
Cmo02g00117 Cmo19g01011 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00117 Cmo-Chr2:615738 Cmo05g00859 Cmo-Chr5:5570993 1.08E-146 dispersed
Cmo11g01944 Cmo-Chr11:13426857 Cmo02g00117 Cmo-Chr2:615738 0 wgd
Cmo19g01011 Cmo-Chr19:8942372 Cmo02g00117 Cmo-Chr2:615738 0 wgd
Cmo02g00117 Cmo-Chr2:615738 Cmo20g00582 Cmo-Chr20:2863747 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00117 - - cmax:111469610 942.954