Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00151 | ATGGACTACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGATGATCTCGCCGTCGCCGCCGCCGCCGCCGGCAACTTCTCCCCTCCACAGTCGGTTGGTTTCAGCTGGTCCAATCCCTCCATCAACTTTTCATCTAAAGACAGCTTGGAGGTAGACTGCTCATATGGAGATCTGGACGGCTTACAGGAAGTGGGTCGAAAACGGCCAAAGACTGAAACAGGCGCTGTTGCATCTTCCACCAAAGCTTGCAGAGAGAAATTGAGAAGAGATAAGCTGAATGAGAGTTTCTTGGAGTTGGCTGCTGTCCTTGAACCTGGAAAACCACCAAAAACAGACAAGGTTGCAATCTTGAGCGATGCCATCAGGATGGTGACTGATTTACAAACTGCAACCCAGAAGCTGAAACAATCTAAGGAGGATTTGAAGGCAAAAATCAAAGAATTAAAGGTTGAGAAGAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCAAATCAAAGGGGTAAATACTCGAGCAGCTGACATCCACCGTCGTCCTCCTACATTGTCACCTGCATTTACAGCACAAGGCCAAGCTGCTGGTCACAAGCTGATGCCTCTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCACCTGCAGCCGTCGACATATCTCAGGATCATGTACTCCGCCCACCTGTTGCTTAA | 729 | 48.29 | MDYSAGNWNWLFDYSTMDDLAVAAAAAGNFSPPQSVGFSWSNPSINFSSKDSLEVDCSYGDLDGLQEVGRKRPKTETGAVASSTKACREKLRRDKLNESFLELAAVLEPGKPPKTDKVAILSDAIRMVTDLQTATQKLKQSKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIKGVNTRAADIHRRPPTLSPAFTAQGQAAGHKLMPLIGYPGIAMWQFLPPAAVDISQDHVLRPPVA | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 740367 | 743752 | + | CmoCh02G001510.1 | Cmo02g00151 | 375748 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00151 | 242 | CDD | bZIP | 146 | 178 | - | - | |
Cmo02g00151 | 242 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 80 | 131 | IPR011598 | GO:0046983 | |
Cmo02g00151 | 242 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 130 | 184 | - | - | |
Cmo02g00151 | 242 | Pfam | Helix-loop-helix DNA-binding domain | 83 | 132 | IPR011598 | GO:0046983 | |
Cmo02g00151 | 242 | SMART | finulus | 86 | 137 | IPR011598 | GO:0046983 | |
Cmo02g00151 | 242 | Gene3D | - | 72 | 129 | IPR036638 | GO:0046983 | |
Cmo02g00151 | 242 | CDD | bHLH_AtILR3_like | 85 | 160 | - | - | |
Cmo02g00151 | 242 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 86 | 159 | IPR036638 | GO:0046983 | |
Cmo02g00151 | 242 | PANTHER | BHLH DOMAIN CLASS TRANSCRIPTION FACTOR | 4 | 242 | - | - | |
Cmo02g00151 | 242 | Coils | Coil | 128 | 183 | - | - | |
Cmo02g00151 | 242 | PANTHER | BHLH TRANSCRIPTION FACTOR | 4 | 242 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00151 | Cmo20g00606 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00151 | Cmo-Chr2:740367 | Cmo16g00916 | Cmo-Chr16:5522341 | 1.05E-97 | dispersed | |
Cmo01g01205 | Cmo-Chr1:9755296 | Cmo02g00151 | Cmo-Chr2:740367 | 9.68E-82 | wgd | |
Cmo02g00151 | Cmo-Chr2:740367 | Cmo20g00606 | Cmo-Chr20:2970707 | 2.87E-138 | wgd | |
Cmo02g00151 | Cmo-Chr2:740367 | Cmo09g00921 | Cmo-Chr9:4812733 | 4.47E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9193 | PF00010 | HLH | 3.00E-09 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00151 | - | - | cpep:111794592 | 460.685 |