Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00151 ATGGACTACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGATGATCTCGCCGTCGCCGCCGCCGCCGCCGGCAACTTCTCCCCTCCACAGTCGGTTGGTTTCAGCTGGTCCAATCCCTCCATCAACTTTTCATCTAAAGACAGCTTGGAGGTAGACTGCTCATATGGAGATCTGGACGGCTTACAGGAAGTGGGTCGAAAACGGCCAAAGACTGAAACAGGCGCTGTTGCATCTTCCACCAAAGCTTGCAGAGAGAAATTGAGAAGAGATAAGCTGAATGAGAGTTTCTTGGAGTTGGCTGCTGTCCTTGAACCTGGAAAACCACCAAAAACAGACAAGGTTGCAATCTTGAGCGATGCCATCAGGATGGTGACTGATTTACAAACTGCAACCCAGAAGCTGAAACAATCTAAGGAGGATTTGAAGGCAAAAATCAAAGAATTAAAGGTTGAGAAGAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCAAATCAAAGGGGTAAATACTCGAGCAGCTGACATCCACCGTCGTCCTCCTACATTGTCACCTGCATTTACAGCACAAGGCCAAGCTGCTGGTCACAAGCTGATGCCTCTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCACCTGCAGCCGTCGACATATCTCAGGATCATGTACTCCGCCCACCTGTTGCTTAA 729 48.29 MDYSAGNWNWLFDYSTMDDLAVAAAAAGNFSPPQSVGFSWSNPSINFSSKDSLEVDCSYGDLDGLQEVGRKRPKTETGAVASSTKACREKLRRDKLNESFLELAAVLEPGKPPKTDKVAILSDAIRMVTDLQTATQKLKQSKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIKGVNTRAADIHRRPPTLSPAFTAQGQAAGHKLMPLIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 740367 743752 + CmoCh02G001510.1 Cmo02g00151 375748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00151 242 CDD bZIP 146 178 - -
Cmo02g00151 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 80 131 IPR011598 GO:0046983
Cmo02g00151 242 Gene3D arf6 gtpase in complex with a specific effector, jip4 130 184 - -
Cmo02g00151 242 Pfam Helix-loop-helix DNA-binding domain 83 132 IPR011598 GO:0046983
Cmo02g00151 242 SMART finulus 86 137 IPR011598 GO:0046983
Cmo02g00151 242 Gene3D - 72 129 IPR036638 GO:0046983
Cmo02g00151 242 CDD bHLH_AtILR3_like 85 160 - -
Cmo02g00151 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 159 IPR036638 GO:0046983
Cmo02g00151 242 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 4 242 - -
Cmo02g00151 242 Coils Coil 128 183 - -
Cmo02g00151 242 PANTHER BHLH TRANSCRIPTION FACTOR 4 242 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00151 Cmo20g00606 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00151 Cmo-Chr2:740367 Cmo16g00916 Cmo-Chr16:5522341 1.05E-97 dispersed
Cmo01g01205 Cmo-Chr1:9755296 Cmo02g00151 Cmo-Chr2:740367 9.68E-82 wgd
Cmo02g00151 Cmo-Chr2:740367 Cmo20g00606 Cmo-Chr20:2970707 2.87E-138 wgd
Cmo02g00151 Cmo-Chr2:740367 Cmo09g00921 Cmo-Chr9:4812733 4.47E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9193 PF00010 HLH 3.00E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00151 - - cpep:111794592 460.685