Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00163 ATGGGAATCTTTCTTTTTTGGCATTTTGGTCGGCCAAATTGCAGAGGAAAAACGAAGCCAGTTCTCGCAAAGGAACCATTCCTCCGTGATGCCAAATGTCAAGCTTCAGAAGAAACTGATCTTGAGAATGGAACACAAGTTGTGGAAAGCAATTCTGACTTTGAAATGGAGGCATTCAATAAGCAGATTCAAGAGATTGAGATACAAGTAGATAAGCTTTCTGGACGTCTTGTTAACTTAAAGAATTTGCTAAGGGATGCTAATGAGGAATCTAAATCTGTTACAAAAACATCGGAGATAATAGCTATTAAGAAACGGATGGAGAAGTATATTAATGATGTGGGAAATATTGCACGCAATGTCAACGGGAAGCTACAAGTTATAACTATAGATATCTTACTCCTTAGGCAGATGCCTGGACGTCAGAAGGGAACTGCCTCAGACAGAGCAAGAATGAACATGACAAATGTCTTGACAAAAAAGCTCAAGGAACTGATGATTGAATTTGAGGTCCTTCGTGAAATAGTTCAGGACGAGTACCGTGAAGTCGTGGAAAGACGATTGATGACAGTCACGGGTAGCAGTCCAGATGAGTTGCTGATTGATCACCTTATAGAAACTGGAATCAGTGAGCAAACGTTCCCGAATGCATTTGAACAAATGGGACAAGGGAAGGTCGTAAGTACCATGGAAGAAATTCAAGAGCGACTCGATGCAGTGAAGGAGCTTGAGAAAAGGCTCTTGGAATTGCATCAGATTTACCTGAAAACAGCAGCTGTAGTGGAGGGTCAAGCTAAACCTTTGGATAACATAGAAAATCAGGGGAGGAACGCACAAGACCGCTCTCAGTCGAGGATCAAAGCAATCCAGGCGGTAAAGAACTTAGAGAAGGAATCAAGAAAAGGCGTGATGTTCATCATCATAACAGTGCTGGTAGTAATAATCTTAAACCTCCTCTCAGCTGATGAGCCATGA 975 41.74 MGIFLFWHFGRPNCRGKTKPVLAKEPFLRDAKCQASEETDLENGTQVVESNSDFEMEAFNKQIQEIEIQVDKLSGRLVNLKNLLRDANEESKSVTKTSEIIAIKKRMEKYINDVGNIARNVNGKLQVITIDILLLRQMPGRQKGTASDRARMNMTNVLTKKLKELMIEFEVLREIVQDEYREVVERRLMTVTGSSPDELLIDHLIETGISEQTFPNAFEQMGQGKVVSTMEEIQERLDAVKELEKRLLELHQIYLKTAAVVEGQAKPLDNIENQGRNAQDRSQSRIKAIQAVKNLEKESRKGVMFIIITVLVVIILNLLSADEP 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 782007 788673 - CmoCh02G001630.1 Cmo02g00163 375760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00163 324 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 26 316 - -
Cmo02g00163 324 Coils Coil 230 250 - -
Cmo02g00163 324 Pfam Syntaxin 59 264 IPR006011 GO:0016020
Cmo02g00163 324 SMART SynN_4 51 181 IPR006011 GO:0016020
Cmo02g00163 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 230 292 IPR000727 -
Cmo02g00163 324 PANTHER SYNTAXIN 26 316 IPR045242 -
Cmo02g00163 324 Gene3D - 219 320 - -
Cmo02g00163 324 SMART tSNARE_6 225 292 IPR000727 -
Cmo02g00163 324 Coils Coil 56 97 - -
Cmo02g00163 324 Gene3D - 56 188 - -
Cmo02g00163 324 SUPERFAMILY t-snare proteins 54 280 IPR010989 GO:0016020|GO:0016192
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00163 Cmo20g00615 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00163 Cmo-Chr2:782007 Cmo14g01110 Cmo-Chr14:7488054 1.88E-65 dispersed
Cmo02g00163 Cmo-Chr2:782007 Cmo20g00615 Cmo-Chr20:3011939 1.18E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00163 K08486 - csv:101214355 350.517