Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00167 ATGTTCCAGCCAAGTATTTTTGACGACGGTAAGCTCCTCCCCTTAGACATGCCTCAAAACACTTCCGATAGCGATTTTGCTCGAATCCGAGACGATGATTTCGATAGCGCTACTAAATCTGGTAGCGACAACAATCATGAACTTGCTTCGGGTGACGATCAAGACCCTCGTCCTAAAAAGAAGCGTTATCATCGTCATACTCAACATCAGATCCAAGAAATGGAAGCTTTTTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGGAAGGAATTAAGCAGGGAATTAGGGTTGGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAATAAACGTACTCAAATGAAGAATCAACATGAACGCCATGAGAACACCCAACTTCGAACCGAAAACGAGAAGCTTCGAGCTGATAACATGAGATATAGAGAAGCTCTTAGCAATGCCTCGTGCCCTAATTGCGGTGGCCCGACTGCCATTGGTGAAATGTCCTTTGATGAACATCATCTTCGACTCGAAAATGCCCGTCTTCGCGAAGAGATCGATCGCATATCCGCAATAGCTGCAAAATATGTGGGGAAGCCAGTAGTGAACTACCCTCTACTTTCTCCACCAGTTCCATCTCGACCATTAGAGCTTGGAATGGGCAACTTCGGACCACAATCAGGCTTAGGAGGAGACATCTACGGTTCGGCTGGTGACCTAATCCGATCCATCAGTGCTCCAACCGAGGCGGACAAGCCGATGATCATCGAGCTAGCAGTTGCAGCCATGGAAGAGCTCACTAGAATGGCTCAACTAGGCGAGCCCTTATGGATGACTAGTCTAGATGGGTCCACTAATGTGCTCAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGGCCTAAGCCATCTGGGTTTAAATGTGAAGCCTCACGTGAATCAGCTGTTGTTATCATGAATCATATTAACCTTGTTGAGATTCTCATGGACGTGAATCAATGGTCAACTTTATTCTCTGGAATTGTGTCAAGAGCTATGACACTTGAAGTGTTATCAACTGGAGTAGCTGGAAATTACAATGGAGCTTTACAAGTGATGACGTCGGAATTTCAAGTTCCGTCGCCATTAGTTCCAACTCGGGAGAGCTACTACGTTCGATATTGCAAACAACATGTGGACGGGACGTGGGCGGTTGTCGATGTTTCATTGGATGATCTTCGTCCTACTCCTGGATTAAGATGCCGACGAAGACCGTCGGGTTGTTTGATCCAAGAAATGCCTAATGGTTATTCAAAGGTTACATGGGTTGAGCATGTTGAGGTTGATGATAGAGGAGTTCATAGTCTTTACAAGCAGCTGGTGAGCTCCGGCCAAGCCTTTGGGGCCAAGCGATGGGTTACAACCTTAGACCGCCAATGTGAACGGCTTGCCAGTGCCATGGCCACCAACATACCCACCGGTGATGTTGGAGTGATAACGAATCAAGAAGGGAGGAAGAGCATGCTGAAGCTGGCTGAGAGAATGGTGATAAGCTTCTGTGCTGGTGTGAGCGCCTCCACGACTCACACATGGACTACTTTGTCGGGTACGGGAGCCGACGATGTTCGAGTCATGACCCGAAAGAGTATCGATGACCCCGGAAGACCTCCGGGTATTGTCCTTAGTGCTGCAACTTCCTTCTGGCTTCCCGTTCCACCTAAGAGAATCTTTGATTTTCTCCGTGACGAGAACTCTCGAAGCGAGTGGGATATTCTGTCGAATGGCGGAGTAGTTCAAGAAATGGCGCACATTGCCAACGGTCGTGACACGGGCAACTGCGTTTCTCTTCTACGTGTAAACAGTGCAAATTCAAGCCAAAGCAACATGCTAATCCTGCAAGAAAGCTGCACAGACCCAACAGCTTCATTCGTCATCTACGCTCCGGTCGACATCGTCGCAATGAACGTCGTCCTCAACGGTGGAGATCCCGACTACGTCGCGCTTCTCCCCTCCGGGTTCGCCATTCTTCCAGACGGCACGGCAGAGACTGCCACCGGTGGTTCACTCCTGACGGTGGCATTTCAGATTCTGGTGGATTCGGTGCCAACAGCAAAACTGTCACTTGGGTCAGTTGCAACGGTGAACAATCTGATTGCTTGTACGGCGGAGAGGATTAAAGCTTCGTTGTCATGTGAGACAGCATAA 2169 48.41 MFQPSIFDDGKLLPLDMPQNTSDSDFARIRDDDFDSATKSGSDNNHELASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGPQSGLGGDIYGSAGDLIRSISAPTEADKPMIIELAVAAMEELTRMAQLGEPLWMTSLDGSTNVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHVDGTWAVVDVSLDDLRPTPGLRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTAETATGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTAERIKASLSCETA 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 799348 803105 + CmoCh02G001670.1 Cmo02g00167 375764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00167 722 MobiDBLite consensus disorder prediction 25 59 - -
Cmo02g00167 722 Gene3D - 299 468 IPR023393 -
Cmo02g00167 722 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Cmo02g00167 722 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 15 719 - -
Cmo02g00167 722 Gene3D - 46 134 - -
Cmo02g00167 722 SUPERFAMILY Bet v1-like 489 714 - -
Cmo02g00167 722 SMART HOX_1 58 121 IPR001356 GO:0003677
Cmo02g00167 722 ProSiteProfiles START domain profile. 241 473 IPR002913 GO:0008289
Cmo02g00167 722 Pfam Homeodomain 60 116 IPR001356 GO:0003677
Cmo02g00167 722 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 719 IPR042160 -
Cmo02g00167 722 Coils Coil 111 143 - -
Cmo02g00167 722 CDD START_ArGLABRA2_like 245 469 - -
Cmo02g00167 722 MobiDBLite consensus disorder prediction 1 68 - -
Cmo02g00167 722 CDD homeodomain 60 118 IPR001356 GO:0003677
Cmo02g00167 722 SUPERFAMILY Bet v1-like 241 472 - -
Cmo02g00167 722 Pfam START domain 251 470 IPR002913 GO:0008289
Cmo02g00167 722 SMART START_1 250 470 IPR002913 GO:0008289
Cmo02g00167 722 SUPERFAMILY Homeodomain-like 48 117 IPR009057 -
Cmo02g00167 722 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00167 Cmo19g00954 CCT
Cmo02g00167 Cmo11g01907 CCT
Cmo02g00167 Cmo11g01907 ECH
Cmo02g00167 Cmo19g00954 ECH
Cmo02g00167 Cmo20g00616 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00167 Cmo-Chr2:799348 Cmo13g00750 Cmo-Chr13:7339496 0 dispersed
Cmo01g01197 Cmo-Chr1:9700078 Cmo02g00167 Cmo-Chr2:799348 1.53E-124 wgd
Cmo11g01907 Cmo-Chr11:13249775 Cmo02g00167 Cmo-Chr2:799348 0 wgd
Cmo19g00954 Cmo-Chr19:8710347 Cmo02g00167 Cmo-Chr2:799348 0 wgd
Cmo02g00167 Cmo-Chr2:799348 Cmo20g00616 Cmo-Chr20:3019339 0 wgd
Cmo02g00167 Cmo-Chr2:799348 Cmo03g00550 Cmo-Chr3:5496170 0 wgd
Cmo02g00167 Cmo-Chr2:799348 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9195 PF01852 START 2.10E-58 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00167 K09338 - csv:101214763 1368.21