Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00170 ATGTTTGTGTTTTGGGTTTGGAGGATTGTGATCAAAGCCAGAGTTGTGGTATTTGCATTGTTCTTTGGGGTATGGATGCCTTTGGGAGTGATTGGTGCGTCTCGAAACACGAGCGTGGTGAACGTTGGAGTTTTGTTCACTCATGATTCAGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCATGGATGATGTTAATGCTGATAACAGTGTTCTTCCTGGAACAAAGCTGAACTTGATCTTACACGACACGAATTGCAGTGGATTTCTTGGAACAGTGGAAGCCTTGCGGCTGATGGAAGATGAAGTAGTTGCCGCCATTGGCCCACAATCCTCAAACATCGCTCACTTCATTTCCCATATCATCAACGAACTCCACATACCCCTTCTATCATTTGGAGCTACCGATCCTACTTTGACCACACCATACTATCCATACTTTGTTCGAACCACACAGAATGATTACTTCCAAATGAACGCAATAGCTGATTTCATAGACCACTTCGGATGGAGAGAGGTCATAGCCATCTTTGTAGATGATGACAATGCCAGAAACGGGATATCAGCATTGAACGATGCCTTAGCTAAGAAGCGTGTCAGGATCTCATACAAGGCCACCTTCTCTCCTGGCTCCCCCACTAGCGTGATAAATGACTTATTGGTATCAGTAAACCTCATGGAATCTCGTGTTTATATTGTTCATGTTAATCCCGACACTGGTTTATCAATATTCTCCATTGCTAAGAAACTTGAAATGATGAACAGTGACTATGTCTGGATTGCAACAGATTGGCTTCCGTCTATTCTTGATTCATTTGAAACAAACAATCCTGATGTAATGAATCATTTACAAGGAATTGTTGCTCTTCGCCACCACACCCCTGATAGCAATCTCAAGAAGAACTTCGCCTCCAAATGGAACACTACAAGCTTCAACTCTTATGCACTTTATGCATACGACTCTGTTTGGTTAGCAGCCAGAGCTCTCCACACATTCTTTCAAGAAGGTGGCAATGTATCATTTTCTAATGACCCAAAGTTACATGAAATCAATGGAAGCAAGCTACAGCTAACCTCACTTAGAGTGTTCAATGGCGGCGAACAACTTCTAGAGACAATCAAGAGAACCAAGTTCAGAGGTGTAAGTGGGTTGGTTCAATTTGGTGATGACAGAAACTTGATTCATCCAGCTTATGATATCATGAACATTGGAGGAACTGGTATGCGTAGAATTGGCTACTGGACAAATTATTCTGGTCTATCAACAATGACACCAGAGAGTTCATATTCAAAGCCTCTTAATGCTACCCCAAATGGCCATCTCTACACTGTAATATGGCCTGGTGAAGCAACAGCCGTTCCTCGTGGATGGGTGTTCCCGCACAACGGGAAGCCATTGCAAATTGTAGTGCCTAACCGTGTGAGTTACAAGGCTTTTGTGACTAAGGACAAGAGCCCACTAGGAGTTAAAGGGTATTGTATTGATGTGTTTGAAGCTGCTATAAACTTGTTGCCATATCCAGTTCCTCACGCATATATATTAAAGGGAGATGACAGTCTTGATTACAACAATCTTGTATATGACGTTTCACAGAAGAGATATGATGCAGCTGTTGGTGATATTATGATTGTAACGAATAGGACGAAGTATGTGGACTTCACACAACCATTTATGGAGTCTGGACTTGTGGTTGTTACTGTTGTTAAAGAGAAGAAGTCGAGTCCATGGGCTTTTCTCAGCCCTTTTACTGTTCCAATGTGGGCTGTCACTGCAATACTCTTTGTTTTTGTTGGAGCTGTTGTTTGGATTCTTGAGCATCGGAGTAATGAAGAGTTTCGTGGTTCACCAAGGCAACAAATAATCACAGTATTTTGGTTTAGCTTCTCGACAATGTTCTTTTCTCACAAGGAAAACACTGTAAGCACACTTGGACGGTCGGTGCTTATAATATGGCTCTTTGTTGTGTTAATTATCAATTCAAGCTACACAGCTGGTTTGACATCTATCTTAACAGTGCAGCAGCTAACTTCAAAGGTTGAAGGGATTGATAGCTTAATCTCTAGCACCGATGCTGTAGGAATTCAAGAAGGCTCATTTTCATTGAATTATCTGATTCATGAGCTGAATATAGCAGCTTCTAGGATCGTTAAGTTGAAGAGCCAGGAGGAATATATGGATGCTCTTCGCCGTGGACCTGCAAATGGTGGGGTAGCCGCCATTGTAGACGAGCTTCCTTATGTCGAGCTTTTCTTGTCGGGCACCAATTGTGTCTTCAGGACTGTCGGGCAGGAGTTCACTAAAAGTGGATGGGGATTTGTATTTCCAAGGGACTCTCCTCTAGCGGTTGATTTGTCAACCGCCATTCTTCAACTCTCAGAGAATGGCGATCTTCAAAAGATTCATGACAAATGGCTATCACGAACGGAGTGTTCGATGAATCTCAACCAAGTCGACGCAAACCAACTATCACTGAGTAACTTCTGGGGTCTGTTTCTAATTTGTAGCATTACCTGCATTGTTGCTCTTTTGATATTCTTCAGTAGAGTAGCATTCCAATATCAAAGAGCTACCCCGGAAGCCCAGCCTGAAGTTGAGGAGACCCAACCTGATAGGACGGGACGCTTCGGTCGTACGACTAGCTTCATCCAATTTCTAGATAAAAAAGAAGTAAAAAAGGCTAAAAGAAAATTCATTGATATCAACCGAGCTGGCCAGAGCTCTGAGGGTCACTCTGATGAACTCAAAAAGGCCGAAGGAAAATTCATTGATATCAACCCAGCTGGCCAGAGCTCTGAGGGTCACCCTGATGAACTCAAAAAAACTAAAGGAAAATCCATTGATATCAACCCAGCTAGCCAGAGCTCTGAGTGTCACCCTGATGAACTCAAAAAGGCTAAAGGAAAATCCATTGATATCAACCCAGCTGGCTAG 2937 42.8 MFVFWVWRIVIKARVVVFALFFGVWMPLGVIGASRNTSVVNVGVLFTHDSVIGRSAQPAILAAMDDVNADNSVLPGTKLNLILHDTNCSGFLGTVEALRLMEDEVVAAIGPQSSNIAHFISHIINELHIPLLSFGATDPTLTTPYYPYFVRTTQNDYFQMNAIADFIDHFGWREVIAIFVDDDNARNGISALNDALAKKRVRISYKATFSPGSPTSVINDLLVSVNLMESRVYIVHVNPDTGLSIFSIAKKLEMMNSDYVWIATDWLPSILDSFETNNPDVMNHLQGIVALRHHTPDSNLKKNFASKWNTTSFNSYALYAYDSVWLAARALHTFFQEGGNVSFSNDPKLHEINGSKLQLTSLRVFNGGEQLLETIKRTKFRGVSGLVQFGDDRNLIHPAYDIMNIGGTGMRRIGYWTNYSGLSTMTPESSYSKPLNATPNGHLYTVIWPGEATAVPRGWVFPHNGKPLQIVVPNRVSYKAFVTKDKSPLGVKGYCIDVFEAAINLLPYPVPHAYILKGDDSLDYNNLVYDVSQKRYDAAVGDIMIVTNRTKYVDFTQPFMESGLVVVTVVKEKKSSPWAFLSPFTVPMWAVTAILFVFVGAVVWILEHRSNEEFRGSPRQQIITVFWFSFSTMFFSHKENTVSTLGRSVLIIWLFVVLIINSSYTAGLTSILTVQQLTSKVEGIDSLISSTDAVGIQEGSFSLNYLIHELNIAASRIVKLKSQEEYMDALRRGPANGGVAAIVDELPYVELFLSGTNCVFRTVGQEFTKSGWGFVFPRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMNLNQVDANQLSLSNFWGLFLICSITCIVALLIFFSRVAFQYQRATPEAQPEVEETQPDRTGRFGRTTSFIQFLDKKEVKKAKRKFIDINRAGQSSEGHSDELKKAEGKFIDINPAGQSSEGHPDELKKTKGKSIDINPASQSSECHPDELKKAKGKSIDINPAG 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 810572 816416 - CmoCh02G001700.1 Cmo02g00170 375767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00170 978 SUPERFAMILY Periplasmic binding protein-like I 35 460 IPR028082 -
Cmo02g00170 978 SMART GluR_14 469 809 IPR001320 GO:0015276|GO:0016020
Cmo02g00170 978 Gene3D - 757 814 - -
Cmo02g00170 978 CDD GluR_Plant 466 807 - -
Cmo02g00170 978 Pfam Bacterial extracellular solute-binding proteins, family 3 479 808 IPR001638 -
Cmo02g00170 978 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 901 - -
Cmo02g00170 978 Pfam Receptor family ligand binding region 57 406 IPR001828 -
Cmo02g00170 978 Gene3D - 59 397 - -
Cmo02g00170 978 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 53 69 - -
Cmo02g00170 978 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 113 141 - -
Cmo02g00170 978 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 320 332 - -
Cmo02g00170 978 Gene3D - 576 716 - -
Cmo02g00170 978 PIRSF IGluLR_plant 10 945 IPR017103 -
Cmo02g00170 978 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276|GO:0016020
Cmo02g00170 978 MobiDBLite consensus disorder prediction 904 978 - -
Cmo02g00170 978 Gene3D - 462 575 - -
Cmo02g00170 978 CDD PBP1_GABAb_receptor_plant 41 423 IPR044440 -
Cmo02g00170 978 PANTHER GLUTAMATE RECEPTOR 3.4 29 901 - -
Cmo02g00170 978 Gene3D - 155 422 - -
Cmo02g00170 978 SUPERFAMILY Periplasmic binding protein-like II 443 808 - -
Cmo02g00170 978 MobiDBLite consensus disorder prediction 904 922 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00170 Cmo20g00620 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00170 Cmo-Chr2:810572 Cmo09g00038 Cmo-Chr9:167186 0 dispersed
Cmo02g00170 Cmo-Chr2:810572 Cmo02g00171 Cmo-Chr2:818809 0 tandem
Cmo11g01904 Cmo-Chr11:13228629 Cmo02g00170 Cmo-Chr2:810572 0 wgd
Cmo02g00170 Cmo-Chr2:810572 Cmo20g00619 Cmo-Chr20:3031474 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00170 K05387 - csv:101215485 1472.99