Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00171 ATGGAGAGCTTATTAATTCTTACATTGATTGGTTCGATATGGGCATTTCTTGCTGGTTCTGCATGTTGCCAAAGGCCAGCGGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCAGTTATAGGAAGAACCGCGAAGGTGGCAATGGAAGCTGCAGTTTCTGATGTTAATGCAGACCCTTCCATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACTCATTGCAATGTTCTCTTGGGCTCTATTGGAGCTTTCCATGTTCTTGAGAAAGACGTGGTAGCCATCGTTGGGCCTCAATCTTCAGTTGTGGCTCATATGGTTCTACAGATTACTAACAATCTCCAAGTGCCTCTTATATCATATGCTGCCACTGATGCAACTTTATCTGCTCTCCAATTCCCCTTTTTCCTACGGACTACTCACAGTGACTCTGATCAAATGACTGCATTAGCAGAATTAATCGACTTTTATGAGTGGAAAGAGGTGATCATGATCTTTGTAGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGATGAACTTGACAAGATGTTTAAAATTTCTCATAAAATACCCTTACCTTCTCTGTTTCATCTCAGAGAAATCACGGACATACTCAATAAATCCAAGCTGCTTGGCCCTCGTGTCTATATTGTTCATGTCAATCCTGATCCTAAATTAAGGATCTTCAAAATAGCTCATCAACTTAATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCAATTCTTCCCATGAACAAAACCTCTCTAAACATCCTTCAAGGAGTGGTTGTTCTTCGTCAACATACTCCTGAATCCAGCCAAAAAACAACATTATGGTCTCGGTTAAGGAATTATTCATTGAATGTCTATGCTCTTAGTGCCTATGATACCATTCAAGTACTTGCACGTTCAATCGATAAGTTTCTGAATGAAGGTAGGAGCATTACCTTCTCTTTGAAGAATAAGTTTCATGATTTAAATACAACTAAAATGCCATTGGGGAAGCTCAAAGTATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGACAAAATTCACTGGTTTAAGTGGTCGGTTCGAGTTCAATTCGGATCGGAATATCATCAGCAGAGGTTATGAGGTGCTTAATATCGATCAGACCGGGTTGCGCACGGTTGGTTACTGGTCCAATATCACAGGCTTTACAATCCAATCACCTGAAACTCTGAAGCAGAAACGAATTAGTTATACTCATCTAAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGGAAGACAGCAAGACCACGCGGATGGGTGATTGCAGACAATGAAAGACCATTGATAATTGGAGTGCCACTTCGAGTAAGTTTCGTTGAATTTGTTTCAGTAACCAATGGAAGCAACAAAAACATTGAAGGATATTGTATTGATCTGTTCAATGAAGCAAGAAAGTTGGTCCCATATGATGTTCCTTACAGGTTTATACCTTTTGGTAATGGCTACTCCAATCCTTGTTATAACGACCTTGTGAAGAACGTTGCCAACGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTAGCCAACCGCACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACTGGTCTTGTTATTGTGGCTCCAATCAAAAATTCAAAATCAAATGCTTGGGTTTTCCTTAAACCATTTACAGTAGAGATGTGGTGTGTTACCTCGGCGTCGTTTTTTATGATCGGCGCGGTCATATGGCTTCTTGAGCATCGAGTAAACGATGATTTCCGTGGTCCACCAAAGAGGCAGCTCTTGACAGTAATACTGTTCAGCTTCTCAACCTTGTTTAAAACGAACCAGGAAGATACTGTAAGTCCACTTGGACGCATGGTAATGGTGGTTTGGCTGTTCTTATTGATGGTTATCACATCAAGCTATACAGCTAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACCAGTGAACACCCAATTGGGTACCAGGTTGGATCGTTTGCATATAGCTATCTGACCGAGAGCCTTTACCTTCCGCGATCGAGGCTTGTACCTCTAGGCTCTCCTGAAGAGTATGAATCAGCACTATTGAAGGGGCCCTTCAAAAAAGGAGGGGTGGCGGCTGTTGTTGATGAACTGCCATATATTGAGTTATTCTTATCAGGGAGGAACGACTTTGGAATGATCGGTCAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCAGTAGACATTTCAACAGCAATTCTAAAGCTCTCCGAGAATGGAAGACTTCAGAAGATCCACGAGAAGTGGTTCTGCAAGAAGGGTTGTCCTGGAGAGAGGAGAAGGAAATCTGAGCCTAACCAACTTCACTTACTCAGCTTCTGGGGTCTATATCTGTTGTGCGGTGCCTTTTCACTCGCTGCTCTTCTCATATTTTTGCTCCGAATCGTTCGACAATTCGCTCGATACACAAGACAGCAGCAGAAGGAATCTTCTCATGCAGAGACGGTATCATCTAATTCAAACTCAAGCTGGATTCATGTCGTATACAAGTTTATCGACTTCGTCGATGAAAAGGAAGAAGCCATCAAGAGACTTTTTCGAAAGAATGATACTCAGAATCAGGCTAAATGA 2718 41.54 MESLLILTLIGSIWAFLAGSACCQRPAVVNIGAVFTFDSVIGRTAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNVLLGSIGAFHVLEKDVVAIVGPQSSVVAHMVLQITNNLQVPLISYAATDATLSALQFPFFLRTTHSDSDQMTALAELIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKMFKISHKIPLPSLFHLREITDILNKSKLLGPRVYIVHVNPDPKLRIFKIAHQLNMMTSDYVWLATDWLSTTLDSILPMNKTSLNILQGVVVLRQHTPESSQKTTLWSRLRNYSLNVYALSAYDTIQVLARSIDKFLNEGRSITFSLKNKFHDLNTTKMPLGKLKVFDDGALLLSILLQTKFTGLSGRFEFNSDRNIISRGYEVLNIDQTGLRTVGYWSNITGFTIQSPETLKQKRISYTHLNQTLGNVTWPGGKTARPRGWVIADNERPLIIGVPLRVSFVEFVSVTNGSNKNIEGYCIDLFNEARKLVPYDVPYRFIPFGNGYSNPCYNDLVKNVANGIFDAAVGDIAIVANRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLLTVILFSFSTLFKTNQEDTVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITSEHPIGYQVGSFAYSYLTESLYLPRSRLVPLGSPEEYESALLKGPFKKGGVAAVVDELPYIELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDISTAILKLSENGRLQKIHEKWFCKKGCPGERRRKSEPNQLHLLSFWGLYLLCGAFSLAALLIFLLRIVRQFARYTRQQQKESSHAETVSSNSNSSWIHVVYKFIDFVDEKEEAIKRLFRKNDTQNQAK 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 818809 823917 - CmoCh02G001710.1 Cmo02g00171 375768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00171 905 Pfam Receptor family ligand binding region 47 394 IPR001828 -
Cmo02g00171 905 Gene3D - 569 701 - -
Cmo02g00171 905 PIRSF IGluLR_plant 1 905 IPR017103 -
Cmo02g00171 905 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 902 - -
Cmo02g00171 905 SUPERFAMILY Periplasmic binding protein-like I 22 448 IPR028082 -
Cmo02g00171 905 Pfam Bacterial extracellular solute-binding proteins, family 3 476 799 IPR001638 -
Cmo02g00171 905 PANTHER GLUTAMATE RECEPTOR 3.7 13 902 - -
Cmo02g00171 905 SMART GluR_14 458 801 IPR001320 GO:0015276|GO:0016020
Cmo02g00171 905 CDD GluR_Plant 455 799 - -
Cmo02g00171 905 Pfam Ligand-gated ion channel 800 830 IPR001320 GO:0015276|GO:0016020
Cmo02g00171 905 Coils Coil 884 904 - -
Cmo02g00171 905 Gene3D - 748 806 - -
Cmo02g00171 905 Gene3D - 463 568 - -
Cmo02g00171 905 Gene3D - 144 409 - -
Cmo02g00171 905 CDD PBP1_GABAb_receptor_plant 30 411 IPR044440 -
Cmo02g00171 905 SUPERFAMILY Periplasmic binding protein-like II 432 801 - -
Cmo02g00171 905 Gene3D - 47 386 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00171 Cmo11g01904 CCT
Cmo02g00171 Cmo20g00619 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00171 Cmo-Chr2:818809 Cmo20g00620 Cmo-Chr20:3045107 0 dispersed
Cmo02g00170 Cmo-Chr2:810572 Cmo02g00171 Cmo-Chr2:818809 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00171 K05387 - csv:101215715 1595.87