Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00180 ATGGACTGGACTAGAGGCCACGTCATTGGCCAAGGCTCCTCTGCCACCGTCTTTCTCGCCACCGCCTCTCCCGGCGGCGATGTCTTCGCCGTCAAATCCGCTGAGGTTTCTCACTCGCAATCTCTACAGAGAGAGCAATGCTTCCTTTCTTGTTTAGCCTCTCCGTACGTGGTTTTTAGTAGAGGCTGCGATGTCCGTACCGAACAGAGTGGCATCGTGATGTTCAATTTGTTCATGGAGTATTTACCCAACGGCTCACTCGCCGACGCGATTCGCCGCCGTGGAGGGCGGCTGGACGAGGCGGCGATCGGAAATTACACGCGGGACTTACTACAGGGATTACTGTACATTCATTCAAAAGGCTTAGTACATTGCGACATTAAAGCCCGAAACGTTTTGATTGGCCGAGACAGTAAGGCGAAACTGGCGGATTTCGGATGCGCCAAGTGGGCGAGCCAGACGGAAGTAATCGGCGGGACGCCCCTGTTTATGGCGCCTGAAGTGGCTCGTGGTGAGCACCAAGGACTCGCCTCTGACATTTGGTCAATTGGGTGTACAATTATTGAAATGGCCACCGGCGGCGGCTCGCCATGGATGAACACAACCGACAACGACCCAATTTCCGCCCTGTATCGAATTGGGTATTCCGGCCAGTTGCCGGAAATTCCATCTTTTTTATCCCAGAAAGCGAAGGATTTCTTAGAGAAGTGTTTTAGGAGAAACCCAAAAGAGAGATGGACGGCGAATCAGCTTCTAGATCACCCATTTTTAAGGGAAGTGAATTCCATTTCCACCGCAAAGCAATTCCGGGAAGTTGATTCAGATTCTCCGACGAGTGTTGTAGAACAGGGGATTTGGAGATCAATTGAAGAATCCGGATTCTTCCGACCCAGTTGGTCGCCGACAGAGCAGATCCGACGGCTGGCAATGGATTCAGGGGAGGCGAGATGGACGGAGGATGAGAATTGGACGACGATCCGAAGCGAAGAAGTGGGTGAGGAAGAGAGAGGCGGTGGCGGCAAAGGGTGGTTGGCAATGGAATTCATAGATAAGAAGAATTTTTGA 1065 52.02 MDWTRGHVIGQGSSATVFLATASPGGDVFAVKSAEVSHSQSLQREQCFLSCLASPYVVFSRGCDVRTEQSGIVMFNLFMEYLPNGSLADAIRRRGGRLDEAAIGNYTRDLLQGLLYIHSKGLVHCDIKARNVLIGRDSKAKLADFGCAKWASQTEVIGGTPLFMAPEVARGEHQGLASDIWSIGCTIIEMATGGGSPWMNTTDNDPISALYRIGYSGQLPEIPSFLSQKAKDFLEKCFRRNPKERWTANQLLDHPFLREVNSISTAKQFREVDSDSPTSVVEQGIWRSIEESGFFRPSWSPTEQIRRLAMDSGEARWTEDENWTTIRSEEVGEEERGGGGKGWLAMEFIDKKNF 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 852639 854993 - CmoCh02G001800.1 Cmo02g00180 375777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00180 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Cmo02g00180 354 SMART serkin_6 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00180 354 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 335 - -
Cmo02g00180 354 Gene3D Transferase(Phosphotransferase) domain 1 2 295 - -
Cmo02g00180 354 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00180 354 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 335 - -
Cmo02g00180 354 PRINTS Tyrosine kinase catalytic domain signature 178 200 IPR001245 GO:0004672|GO:0006468
Cmo02g00180 354 PRINTS Tyrosine kinase catalytic domain signature 116 134 IPR001245 GO:0004672|GO:0006468
Cmo02g00180 354 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672|GO:0006468
Cmo02g00180 354 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cmo02g00180 354 Pfam Protein kinase domain 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00180 354 SUPERFAMILY Protein kinase-like (PK-like) 2 267 IPR011009 -
Cmo02g00180 354 CDD STKc_MAPKKK 2 257 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00180 Cmo11g01890 CCT
Cmo02g00180 Cmo19g00939 CCT
Cmo02g00180 Cmo11g01890 ECH
Cmo02g00180 Cmo19g00939 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00180 Cmo-Chr2:852639 Cmo20g01005 Cmo-Chr20:6127972 1.06E-59 dispersed
Cmo07g00716 Cmo-Chr7:3227217 Cmo02g00180 Cmo-Chr2:852639 1.31E-70 transposed
Cmo17g00885 Cmo-Chr17:8041305 Cmo02g00180 Cmo-Chr2:852639 6.88E-51 transposed
Cmo01g01167 Cmo-Chr1:9545207 Cmo02g00180 Cmo-Chr2:852639 1.23E-103 wgd
Cmo11g01890 Cmo-Chr11:13141047 Cmo02g00180 Cmo-Chr2:852639 1.54E-130 wgd
Cmo19g00939 Cmo-Chr19:8635652 Cmo02g00180 Cmo-Chr2:852639 3.40E-121 wgd
Cmo02g00180 Cmo-Chr2:852639 Cmo03g00571 Cmo-Chr3:5572843 9.49E-94 wgd
Cmo02g00180 Cmo-Chr2:852639 Cmo09g00962 Cmo-Chr9:5072083 2.84E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74084 PF00069 Pkinase 2.00E-52 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00180 K20716 - csv:101208274 467.233