Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00202 ATGCAACAAAGCTTGAGAATGATGGAGAAAATGGTAAACGATGAATTCCCGAACTCTTTCCTCCAAATCCCGCTCGCCCGATCCAACCCTTTTTCGGCCAAGAAGAAGCGCAACCACCCCGGAACCCCCGATCCCGACGCGGAAGTCATAGCGCTGTCGCCCAAGACACTGATGGCCATGAACAGATTCGTGTGTGAAATATGTGGGAAAGGGTTTCAAAGAGACCAAAACTTGCAGCTCCATAGACGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGAAGCAACAAAGAGGTGAGGAAGAGAGTGTATGTGTGCCCTGAAACCAGCTGCGTGCACCACCATCCATCCAGAGCGCTGGGGGATCTCACCGGGATTAAGAAGCACTTTTGTAGAAAGCATGGCGAGAAGAAGTGGAAGTGTGAGAAGTGCTCTAAGAGATATGCTGTTCAGTCTGATTGCAAAGCGCACTCCAAAACTTGTGGCACTAAAGAGTACAAATGTGGCTGTGGTACTCTATTTTCCAGGAGAGACAGCTTCATTACTCACAGGGCTTTCTGCGATGCATTAGCTGAAGAAACAGCGAGAGTGAACGCCGCCACTACAATAACAGCCGCCATGACAGCCGCCGGCAATTTCAATTGCAATTTCATGGCCGGAATCACAGAGCCACCATTCATGCCTTCAATTTTCAGCTGCAATGGCCTCTCCTCAAGAACCAACAACAACAACAACAGCAATCTACACCCACTTCCCCAAATTAATTCAGGGCTAATGTACTGTGACCCTTTATTAAATTCTTGCCACGCGCCGCCACCAGCTGACTACAATCTGAATTGGGTATTTGGAACAAAGGGTAATAATTCAGTTCAAAATCCGCCGTTGATGAGTGGCAGTGGCGGTGGCGGTGTTTCTTCACTGTACAGCCACCAATTACAGCAAGTGAATCAAACCCACATGGCTAACATGTCAGCCACTGCTTTGCTGCAGAAAGCTGCTGAAATTGGGGCAAATTCCAGCTCGGATCCACCATTTTTTCAAGAGGGTTTTGTGCTCAAATGCAGCGGCGGTACAGTTCAAAATGGGAATGAATTTTCAAATTCTGTTACTCAAATCCCAATTATGGCGAATGAGAATGAGATGTACACTGCAAAACGGCGTCGTACTCAGAGTGAATTCATGGGAAGTGGAAGTGGGTTCACAGGAGGAGGGCAGACAAGGGATTTTCTTGGAGTTGGTGCCAACACCATTTGCCACACTTCATCCATTAATGGATGGATTTAG 1284 47.51 MQQSLRMMEKMVNDEFPNSFLQIPLARSNPFSAKKKRNHPGTPDPDAEVIALSPKTLMAMNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKRVYVCPETSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDCKAHSKTCGTKEYKCGCGTLFSRRDSFITHRAFCDALAEETARVNAATTITAAMTAAGNFNCNFMAGITEPPFMPSIFSCNGLSSRTNNNNNSNLHPLPQINSGLMYCDPLLNSCHAPPPADYNLNWVFGTKGNNSVQNPPLMSGSGGGGVSSLYSHQLQQVNQTHMANMSATALLQKAAEIGANSSSDPPFFQEGFVLKCSGGTVQNGNEFSNSVTQIPIMANENEMYTAKRRRTQSEFMGSGSGFTGGGQTRDFLGVGANTICHTSSINGWI 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 947623 949680 + CmoCh02G002020.1 Cmo02g00202 375799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00202 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Cmo02g00202 427 Gene3D Classic Zinc Finger 59 86 - -
Cmo02g00202 427 Gene3D Classic Zinc Finger 97 187 - -
Cmo02g00202 427 PANTHER ZINC FINGER PROTEIN MAGPIE 30 421 - -
Cmo02g00202 427 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cmo02g00202 427 SMART c2h2final6 139 159 IPR013087 -
Cmo02g00202 427 SMART c2h2final6 63 85 IPR013087 -
Cmo02g00202 427 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Cmo02g00202 427 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 421 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00202 Cmo11g01874 CCT
Cmo02g00202 Cmo20g00655 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00202 Cmo-Chr2:947623 Cmo01g00064 Cmo-Chr1:257387 1.13E-108 dispersed
Cmo11g01874 Cmo-Chr11:13053925 Cmo02g00202 Cmo-Chr2:947623 9.80E-119 wgd
Cmo02g00202 Cmo-Chr2:947623 Cmo20g00655 Cmo-Chr20:3205336 9.29E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9199 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00202 K25870 - csv:101211656 483.411