Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00223 ATGCTGAGACAAAACGTTCACTTGTCGTTAACAAAATGTATTGCCAAGAACTTTCCTTGTCTGGTGATGGTAAATGTTTTCTATATATTTCCGTCCGGCATCAACACCAAGATGCCAGCTGATAATTCAATTCCATTTGACAGAGATGCCGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACGATGATCTTCTTGGGTCTGGAGCAGTGAAGAAAGTATATCGGGCATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAGGTTCGATTGAGGAAATTCAGTGGGGATCCAGTGTTCATCAACCGCTTGAGATCGGAGGTTCAGCTGCTGAGCACGTTGAGTAACGATTATATCATAGTTTGCTACAGTGTTTGGAATGATGATGAGCACAATACGTTGAATTTCATTACCGAGGTGTGTACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCAAAGCAGGTACTTGAGGGATTGGATTATCTTCATAATCATGAGCCTTGCATTATTCATCGAGATCTCAACTGCAGTAACATATTTGTCAATGGGAATATTGGTCAGGTGAAAATAGGTGATCTAGGTTTTGCAGCTATAGTTGGCAAGAGTCATGCTGCGCACTCAATCATAGGCACACCGGAGTATATGGCACCAGAACTGTACGAGGAAGATTACACAGAGATGGTGGATATATACTCTTTTGCGATGTGTTTGCTTGAGATGGTCACGATGGAGATACCATACAGTGAATGTGATAGTATTGCCAAGATATACAAGAAGGTGACGACTGGAATAAAACCCCAAGCATTAAACAAAGTGACAAATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCAAGGCCTACCACTTCTGAACTTCTCAAGGACCCCTTCTTCGATGAAGTCAGGGATGAAGATTCCGAACAGAGTTATTAG 1002 42.42 MLRQNVHLSLTKCIAKNFPCLVMVNVFYIFPSGINTKMPADNSIPFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRKFSGDPVFINRLRSEVQLLSTLSNDYIIVCYSVWNDDEHNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHNHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGKSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSIAKIYKKVTTGIKPQALNKVTNDEVRAFIEKCIAQPRARPTTSELLKDPFFDEVRDEDSEQSY 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1026703 1031754 - CmoCh02G002230.1 Cmo02g00223 375820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00223 333 SUPERFAMILY Protein kinase-like (PK-like) 56 322 IPR011009 -
Cmo02g00223 333 Gene3D Transferase(Phosphotransferase) domain 1 146 327 - -
Cmo02g00223 333 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 38 325 - -
Cmo02g00223 333 Gene3D Phosphorylase Kinase; domain 1 48 144 - -
Cmo02g00223 333 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00223 333 Pfam Protein kinase domain 67 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00223 333 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 38 325 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00223 Cmo11g01840 CCT
Cmo02g00223 Cmo19g00886 CCT
Cmo02g00223 Cmo19g00886 ECH
Cmo02g00223 Cmo11g01840 ECH
Cmo02g00223 Cmo20g00670 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00223 Cmo-Chr2:1026703 Cmo06g00880 Cmo-Chr6:5019086 3.71E-163 dispersed
Cmo16g00981 Cmo-Chr16:6714689 Cmo02g00223 Cmo-Chr2:1026703 1.88E-154 wgd
Cmo02g00223 Cmo-Chr2:1026703 Cmo20g00670 Cmo-Chr20:3271666 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74085 PF00069 Pkinase 1.30E-50 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00223 K08867 - csv:101222153 580.482